Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3238 ATGGGAGTTGTCACTGTAGGTGAATTTAAGCCTAGTGTTTCAGGGAAGAGGAGCTTTCGTCCAAGCTCAAGCATAAGGCATGCTACTGAATGGCCGATATCTGATGTCTCTAGTGATCTTAGCATCGAAATAGGAGCTTCATGCTTTGCACTTCACAAGTTTCCTCTAGTTTCTAGGAGTGGAAGAATTAGGAAACTATTGTTAGAATCAAAAGATTCTAAAGTTTCGCGCATAAGTTTCCCTAATGTACCAGGTGGTGTGGAGGCATTTGAGCTAGCTGCAAAATTCTGTTATGGAATTAGCATCGAGTTCACTCTCTCCAATGTTGCTATGCTAAGATGCATAGCCCATTTTCTAGAAATGACAGAAGAATTCGCCGAGAAAAACTTGTTGACGCGAGCCGAATCATATCTAAAAGAGACGGTGCTTTCAAGCACAGCAAACTCAATATCCGTTCTTCACCGATGTGAAACTCTCCTACCAATTTCTGAAGAGATTAGCCTTGCTAACAGATTAATCAATGCAATTTCAAGTAATGTGTGCAAAGAGCAACTTGCTTCTGGTTTGCAAAAACTAGACCATAGTTTTCCTTCTAAAATCATTGAACCTGAAACACCTTCAGAATGGTGGGGAAAATCTCTTACTGTTCTTAATCTTGATTTCTTCAAAAGAGTTTTATCTGCAATGAAGTCAAAGGGTCTTAAACAAGACATTATCAGCAAAATTTTGATAAACTATGCACATAATTCTCTTCAAGTAGTCAAAGGAAATTTACTTGATTTAGAATTTTTGAAGAAACAAAGGGTCCTTGTTGAAACAATAACTAGTTTACTACCAACTCAATCAAGGAAAAGTCAGATTCCAATAGCTTTTCTCTCAAGTTTGTTGAAATCTGCAATAGCATCATCAGTATCTACTTCTTGTAGATCTGATTTGGAGAGAAGGATTGGTCTGCAACTTGACCAAGCAATTCTTGAAGATATTCTGATTCCAACAAGTTTATATCAAAACAATAACCACAGCAGTACTATCTATGATACAGACTCAATTGTGAGGATTTTTTCCATTTTTCTTAACTTGGATGAGGAGGATGAGGACGATAGCCGAATGAGAGATGAAACTGAAATGGTTTATGATTTTGATAGCCCAGGATCGCCAAAACAAAGCTCAATTCTTAAGGTATCCAAATTGCTGGATAACTATCTTGCTGAAGTAGCTTTAGACCCAAACTTGCTTCCATCAAAGTTCATTTCACTTGCTGAGTTACTTCCTGATCATGCGCGAATTGTAAGCGATGGACTCTATAGAGCAGTCGATATCTTCCTTAAGGTTCATCCAAACATGAAGGAGTCAGAGAGGTACCGATTATGCAAAACTATCGACTGTCAGAAACTATCACAAGAAGCATGCAGCCATGCAGCACAAAATGAAAGACTACCAGTTCAAATGGCAGTACAAGTTCTATACTTCGAACAAATCCGTCTACGCAACGCTATGAACGGAGGAGGACACAATCAACTACTTTTTGGTGGACTTAACGGTCAATTCCCTCAACGTTCAGGCAGTGGTGCAGGAAGTGGAGCAATGTCACCTAGAGATAACTATGCATCAGTTAGAAGAGAGAACCGTGAGCTGAAACTCGAAGTAACAAGAATGAGAATGAGACTCACTGATTTGGAGAAAGATCATGTTTCTATGAAACAAGAGCTTGTTAAGTCTCATCCTGCTAATAAACTCTTCAAATCATTCACCAAGAAATTAAGTAAGCTTAATGCATTGTTTCGGATGAATGGTATTAAGGCGAATGGCGTTGGTTCGGAGAGTCGGTTTCCTTTTCCAAAGAGAAGGCGTCACTCAGTTGCTTGA 1866 0.3896 MGVVTVGEFKPSVSGKRSFRPSSSIRHATEWPISDVSSDLSIEIGASCFALHKFPLVSRSGRIRKLLLESKDSKVSRISFPNVPGGVEAFELAAKFCYGISIEFTLSNVAMLRCIAHFLEMTEEFAEKNLLTRAESYLKETVLSSTANSISVLHRCETLLPISEEISLANRLINAISSNVCKEQLASGLQKLDHSFPSKIIEPETPSEWWGKSLTVLNLDFFKRVLSAMKSKGLKQDIISKILINYAHNSLQVVKGNLLDLEFLKKQRVLVETITSLLPTQSRKSQIPIAFLSSLLKSAIASSVSTSCRSDLERRIGLQLDQAILEDILIPTSLYQNNNHSSTIYDTDSIVRIFSIFLNLDEEDEDDSRMRDETEMVYDFDSPGSPKQSSILKVSKLLDNYLAEVALDPNLLPSKFISLAELLPDHARIVSDGLYRAVDIFLKVHPNMKESERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGGHNQLLFGGLNGQFPQRSGSGAGSGAMSPRDNYASVRRENRELKLEVTRMRMRLTDLEKDHVSMKQELVKSHPANKLFKSFTKKLSKLNALFRMNGIKANGVGSESRFPFPKRRRHSVA* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3238 621 Coils Coil 535 562 - -
Mtr1g3238 621 SUPERFAMILY POZ domain 22 123 IPR011333 -
Mtr1g3238 621 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 614 - -
Mtr1g3238 621 PANTHER OS12G0117600 PROTEIN 25 614 IPR043454 -
Mtr1g3238 621 Pfam BTB/POZ domain 37 138 IPR000210 GO:0005515
Mtr1g3238 621 Pfam NPH3 family 208 470 IPR027356 -
Mtr1g3238 621 Gene3D Potassium Channel Kv1.1; Chain A 23 147 IPR011333 -
Mtr1g3238 621 ProSiteProfiles NPH3 domain profile. 208 494 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3238 Mtr-Chr1 43656613 43661236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3238 1 444 EF-hand Containing Proteins AT2G47860 58.910 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3238 - - mtr:MTR_1g088885 1169.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3238 1 43656613 43661236 Mtr1g3238 1 43656613 43661236 ECH
Mtr7g3399 7 51063405 51067482 Mtr1g3238 1 43656613 43661236 PCT