Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3041 ATGGCCAAGGAAGCTTCTTTCTGTCTCTTGTTTCTCTCTTCTCTCTTAATTTCATGTTCTGGATCTTTGGTGGGTTTTTCATATCATGAGAGAGGAGACACATTGACATCATTCCTCCAGCATAGCAAAGTTTCTTCGTCTCAGATTCGAGCTTTCGTCACAGATCATTGGATTTTGAGCACTCTTACCAACTCAAAACTGTTAGTTGATCTCTACTTAAACAAAAGCCAAGTTGAAAAATTCATTACTTCAAAACCTTCAGCAGTTTCTGAGCTAAAAGCTCAACTAGTGAACTTTCTTCCACATTTAAACATCAAAAGCATCATTGTTAGCTGTGGAAGTGAGTGCTTATTACAAAATGAGCTGCCTTTGATTATGCATGCTCTTAAATCAATTCATTCAATTCTCAGTGATCTTCACATAAGTAAAGAAGTAAAAATCTCGGTCGCATTTCCACTTCAAGTCTTAAGGAAGTTGAATGCATCACAAGAACACGAAATTCGTAGATTACTTTCATTTATAAAGGAAACGAAATCGTTTGTGATGATAGAAGACAACATTGATGGAGAATTAAGAATGGATGACCATTTTGTTCAAACTATTATCAAACGCGCTAATCTTGCCGCTTCTGTTCTTCCTTGCAAAGATGTTCCTTTGGTTCTTACAATCAAGAGTTCAGTTATACCAAGTTCAATAGAAGTAACTCAATTTAGTAAAAGAGTATCGAAATATTTAGAAGCAAAAAGAATAGCTGCATTATATGTAGAACTGCATACAACAGAAGATTCTTCAATGAAAGAGCTCAAAAGGGAAGAGGAAGGTATGTTTCATTTGTCTAGAAGAGAGATCTTAAGCAAATTCCACAGAAGAAAAATTATAGACAACACAAACAGTCCAACGAACACAGTTTACCCTACAAATCCAACACCGGTTATTACACCCTCAGATACACCAACCATTATAGCAGTTCCTTCCACAAATCCTGTCACAATTTCCCCTACAAATCCAGCTGCAATGCCAGTAACAGTTCCTTCAACTACACCTGTTGTTCCTTTAGCTCCAACAACTCCAACCATTACACCGGCACCGGTCTTCAATCCAGCTACAACTCCTACAACAGTTCCAGGTGCACCACCAGTAACATCTTATCCACCTCCAGTAACATCTTATCCACCTCCATTGGGAAATGTTCCAGTGGTAAACCCTCAACAGCCACCTCCTTCAAACACAAATGCTCCTTCTATTCAGGGACAGAGTTGGTGTGTGGCGAAAACAGGTGCTCCACAAGCTTCCCTTCAATCAGCATTGGATTATGCTTGTGGAAATGGTGCTGATTGTTCTCAAATACAACAGGGTGCAAGTTGTTACAGTCCTGTTACTTTGCAGAACCATGCTTCTTTTGCCTTCAACAGTTACTATCAAAAGAAGCCAGCTCCAACAAGTTGCGACTTTGGAGGCGCTGCTATGTTAGTTAGCTCAAATCCAAGTTCTGGTTCTTGCATTTATCCGTCATCATCTTCGTCGTCATCGTCAACCTCAACTTCACCAATGATATCATCTCCAGCACCACCTACACAATCAACTTCAACTTCAATACCACCACCAAGTCTAACAACACCTTCACCATCTATTCCAACAATAGCTCCACCAACAATGTCAACAGCTCCATCATCAATTCCAACAGCTCCACCAACATCTTCAGGCACTTTTGGCTATGGTACCCCACCTTCAGTGTTAAACTCAAGCAACCCAGCTTCAGGTACAATGCCAGATTTTGGGTCTGATAGCCCTCCTATTGTAAACACAACATCGGCCTCACACCCTCGAGCTCTGAAACCTTTTACTGGCTGTATAGTCTTGATGATTCCATTTGTCACTGCAAGCCTCAGCATGCGCCTATAG 1902 0.4054 MAKEASFCLLFLSSLLISCSGSLVGFSYHERGDTLTSFLQHSKVSSSQIRAFVTDHWILSTLTNSKLLVDLYLNKSQVEKFITSKPSAVSELKAQLVNFLPHLNIKSIIVSCGSECLLQNELPLIMHALKSIHSILSDLHISKEVKISVAFPLQVLRKLNASQEHEIRRLLSFIKETKSFVMIEDNIDGELRMDDHFVQTIIKRANLAASVLPCKDVPLVLTIKSSVIPSSIEVTQFSKRVSKYLEAKRIAALYVELHTTEDSSMKELKREEEGMFHLSRREILSKFHRRKIIDNTNSPTNTVYPTNPTPVITPSDTPTIIAVPSTNPVTISPTNPAAMPVTVPSTTPVVPLAPTTPTITPAPVFNPATTPTTVPGAPPVTSYPPPVTSYPPPLGNVPVVNPQQPPPSNTNAPSIQGQSWCVAKTGAPQASLQSALDYACGNGADCSQIQQGASCYSPVTLQNHASFAFNSYYQKKPAPTSCDFGGAAMLVSSNPSSGSCIYPSSSSSSSSTSTSPMISSPAPPTQSTSTSIPPPSLTTPSPSIPTIAPPTMSTAPSSIPTAPPTSSGTFGYGTPPSVLNSSNPASGTMPDFGSDSPPIVNTTSASHPRALKPFTGCIVLMIPFVTASLSMRL* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3041 633 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Mtr1g3041 633 MobiDBLite consensus disorder prediction 501 526 - -
Mtr1g3041 633 Gene3D Glycosidases 24 186 - -
Mtr1g3041 633 MobiDBLite consensus disorder prediction 501 604 - -
Mtr1g3041 633 Pfam X8 domain 420 489 IPR012946 -
Mtr1g3041 633 PRINTS Proline rich extensin signature 294 310 - -
Mtr1g3041 633 PRINTS Proline rich extensin signature 324 345 - -
Mtr1g3041 633 PRINTS Proline rich extensin signature 350 366 - -
Mtr1g3041 633 PRINTS Proline rich extensin signature 367 384 - -
Mtr1g3041 633 PRINTS Proline rich extensin signature 386 411 - -
Mtr1g3041 633 Gene3D - 414 517 - -
Mtr1g3041 633 MobiDBLite consensus disorder prediction 527 549 - -
Mtr1g3041 633 SMART X8_cls 419 502 IPR012946 -
Mtr1g3041 633 MobiDBLite consensus disorder prediction 550 604 - -
Mtr1g3041 633 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 139 598 IPR044965 GO:0004553|GO:0005975
Mtr1g3041 633 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 139 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3041 Mtr-Chr1 41611208 41613930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3041 395 505 Glycoside Hydrolase AT2G05790 54.310 2.31e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3041 - - cam:101499863 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3041 1 41611208 41613930 Mtr1g3041 1 41611208 41613930 ECH
Mtr7g3580 7 52828001 52830635 Mtr1g3041 1 41611208 41613930 PCT