Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2496 ATGGCATTTAAAGGGTATATCCTATTTCTAGTTATGGTCCTAGTGGCCAATATGTGTACTCAAAATGAAGCTCAATCAGGTTGTACATCAACGATCACTAGCTTGAGCCCTTGTCTAAACTACATAATGGGGAGTTCTTCAAATCCATCATCTTCATGTTGCTCACAACTTTCAAGTGTAGTCCAATCTTCTCCTCAGTGTCTATGCTCCCTCCTTAATGGTGGTGGTTCCTCTTTTGGAATCACTATAAATCAAACACTTGCTCTCTCTCTCCCTTCTGCTTGTAAGGTTCAAACTCCACCTGTTAGTCAGTGCAAAGGTGGCAATGGACAGACATCTCCAACAAGTTCAACTTCTCCGGCGGGCTCTCCTGTTGATTCTCCAACTGAATCACCCGAAGGCGCAATAACACCTTCTGCTAACTCAGATTTTCCCTCAGGTGGAGCAGGATCAAAAAGTATACCATCAACAGATGGTGGCTCATCCAATGGAAGCACTATTGAAGTCTCGTTCAACTTGTTTCTTTCACTTCTTGCCATTGTGTTTTGTGTCATCACCAAGTTCTGA 567 0.4303 MAFKGYILFLVMVLVANMCTQNEAQSGCTSTITSLSPCLNYIMGSSSNPSSSCCSQLSSVVQSSPQCLCSLLNGGGSSFGITINQTLALSLPSACKVQTPPVSQCKGGNGQTSPTSSTSPAGSPVDSPTESPEGAITPSANSDFPSGGAGSKSIPSTDGGSSNGSTIEVSFNLFLSLLAIVFCVITKF* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2496 188 MobiDBLite consensus disorder prediction 102 161 - -
Mtr1g2496 188 SMART aai_6 28 105 IPR016140 -
Mtr1g2496 188 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 7 185 - -
Mtr1g2496 188 Pfam Probable lipid transfer 11 105 IPR016140 -
Mtr1g2496 188 Coils Coil 188 188 - -
Mtr1g2496 188 Gene3D - 25 105 IPR036312 -
Mtr1g2496 188 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 106 IPR036312 -
Mtr1g2496 188 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Mtr1g2496 188 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Mtr1g2496 188 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Mtr1g2496 188 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 7 185 IPR043325 -
Mtr1g2496 188 CDD AAI_LTSS 35 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2496 Mtr-Chr1 35775358 35776478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2496 1 185 Lipid Metabolism Gene Families AT3G22600 46.809 2.23e-42 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2496 - - mtr:MTR_1g071730 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2496 1 35775358 35776478 Mtr1g2496 1 35775358 35776478 ECH
Mtr1g2496 1 35775358 35776478 Mtr7g2824 7 44964154 44965384 PCT