Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2455 ATGGCAACCATCTCAGCTACCACTACAACTGCATCGATCACCCGTGCATGTCTTGCACAAAAGAGACCTCTTTCAGTTTCATCCTCTCCTGTTCTTGGATTGCCAACAATGGCTAAGGTTGGAAGAGTGAGGTGTTCAATGGAGGGAAAACCTTCTTCAGTGAATGAAAGCAACTCAAACATTGGAATGGGATCATCTTTGTTTGCAGCTGCATGTGCTGCAGCCATGTCAAGCCCAGCAGCCATGGCATTGGTGGATGAAAGAATGAGTACTGAAGGAACCGGACTTCCCTTTGGACTCAGCAACAATCTTCTTGGATGGCTCCTTTTTGGTGTGTTCGGTTTTATCTGGGCTCTCTATTTTATTTACGCTTCGGGTCTTGAAGAGGATGAAGAGTCTGGATTATCCCTTTAA 414 0.4565 MATISATTTTASITRACLAQKRPLSVSSSPVLGLPTMAKVGRVRCSMEGKPSSVNESNSNIGMGSSLFAAACAAAMSSPAAMALVDERMSTEGTGLPFGLSNNLLGWLLFGVFGFIWALYFIYASGLEEDEESGLSL* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2455 137 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 137 IPR009806 GO:0009507|GO:0009523|GO:0015979
Mtr1g2455 137 Pfam Photosystem II reaction centre W protein (PsbW) 1 137 IPR009806 GO:0009507|GO:0009523|GO:0015979
Mtr1g2455 137 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2455 Mtr-Chr1 35218097 35219350 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2455 K02721 - gmx:100305788 151.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2455 1 35218097 35219350 Mtr1g2455 1 35218097 35219350 ECH
Mtr7g2861 7 45426680 45427460 Mtr1g2455 1 35218097 35219350 PCT