Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2309 ATGGGTCAAGGAACTCCCGGCGGCATGAACCGACAAGGCCATCCCGGTGACCGGAAACAAGACGGCAGCGACAAAAAAGAAAAGAAATTCGAACCAGCAGCACCACCGGCGCGTGTAGGTCGTAAACAACGCAAACAAAAGGGTCCAGATGCCGCTTCACGGTTACCGACGGTGACTCCGGTATCGAAGTGCAAGCTGAGGCTGTTAAAGCTTGAGAGGGTGAAGGATTATTTGTTGATGGAGGAAGAGTTTGTTGCGTATCAAGAGAGGTTGAAGCCTCAGGAGGAAAAGGCGGAGGAAGATAGATCTAAGGTTGATGATCTACGTGGCTCTCCGATGAGTGTTGGGAATTTGGAGGAATTGATTGATGAGAATCATGCGATTGTTTCGAGTTCGGTTGGGCCGGAGTATTATGTTGGGATTTTGTCTTTTGTTGATAAGGATCAGTTGGAGCCTGGTTGTGCTATTTTGATGCATAATAAGGTTCTTTCGGTTGTTGGCCTTCTGCAAGATGAAGTTGATCCAATGGTATCGGTCATGAAAGTCGAGAAGGCTCCTTTGGAATCTTATGCTGACATTGGTGGTTTAGATGCACAGATTCAGGAAATCAAAGAGGCAGTTGAGCTACCCCTTACACATCCTGAACTATATGAAGATATTGGTATCAAGCCTCCTAAGGGGGTCATATTATATGGAGAACCTGGAACAGGAAAGACCTTGCTTGCAAAGGCTGTGGCAAACTCAACATCAGCTACATTCTTGCGTGTAGTAGGTAGTGAATTGATACAAAAGTACTTGGGAGATGGTCCAAAACTTGTGAGGGAACTTTTCAGAGTCGCCGATGATCTTTCTCCTGCTATTGTTTTCATTGATGAAATTGATGCAGTCGGTACAAAGAGGTATGATGCTCACTCAGGTGGAGAACGTGAAATTCAAAGGACTATGTTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTAAAAGTGATTCTGGCTACCAACAGAATTGAAAGTCTTGATCCAGCTTTGCTACGACCTGGTCGTATTGACAGGAAGATTGAATTTCCTCTTCCTGATATCAAAACAAGAAGACGTATTTTCCAGATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTGTTATGACCAAGGATGAATTCTCTGGAGCTGATATAAAGGCAATATGTACTGAAGCTGGCTTACTTGCTCTAAGGGAACGCCGAATGAAGGTGACTCATCCTGACTTTAAGAAGGCAAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGAGTGCCAGAAGGACTATATATGTGA 1341 0.4385 MGQGTPGGMNRQGHPGDRKQDGSDKKEKKFEPAAPPARVGRKQRKQKGPDAASRLPTVTPVSKCKLRLLKLERVKDYLLMEEEFVAYQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPAIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKDKVMFKKKEGVPEGLYM* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2309 446 Pfam ATPase family associated with various cellular activities (AAA) 228 361 IPR003959 GO:0005524|GO:0016887
Mtr1g2309 446 Pfam AAA+ lid domain 383 426 IPR041569 -
Mtr1g2309 446 ProSitePatterns AAA-protein family signature. 331 349 IPR003960 GO:0005524|GO:0016887
Mtr1g2309 446 Gene3D - 113 180 IPR012340 -
Mtr1g2309 446 SMART AAA_5 224 363 IPR003593 -
Mtr1g2309 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 439 IPR027417 -
Mtr1g2309 446 Pfam Proteasomal ATPase OB C-terminal domain 115 168 IPR032501 -
Mtr1g2309 446 PANTHER BNAA08G13550D PROTEIN 18 446 - -
Mtr1g2309 446 MobiDBLite consensus disorder prediction 1 56 - -
Mtr1g2309 446 Gene3D - 366 440 - -
Mtr1g2309 446 MobiDBLite consensus disorder prediction 14 35 - -
Mtr1g2309 446 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 18 446 - -
Mtr1g2309 446 CDD AAA 194 361 - -
Mtr1g2309 446 Gene3D - 181 361 IPR027417 -
Mtr1g2309 446 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 86 433 IPR005937 GO:0005737|GO:0030163|GO:0036402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2309 Mtr-Chr1 33585259 33589986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2309 189 431 Miscellaneous Gene Families AT3G47060 43.952 1.33e-54 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2309 K03062 - jre:108990723 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2309 1 33585259 33589986 Mtr1g2309 1 33585259 33589986 ECH
Mtr7g2994 7 46804772 46810120 Mtr1g2309 1 33585259 33589986 PCT