Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2078 ATGGAGGTGTTTCAAGTAGCTAGTGAAGGAGTTGGTATGCAACTTGCGTTTATTTGGAGGAAAATAAGAGAACCTTTGATCGTGCCAATGCTGAGAGCTGCAGTGTTTATCTGCCTAAGCATGTCATTGATGATATTGGTTGAGATAGTTTACATGGGAATTGTGATTTGTTTAGTGAAGTTGTTTAAAAGAACACCTGAGAAACGTTATAAATGGGAGACTATTAAGGATGATGTTGAGTTGGAAAACTCTAATTACCCTATTGTTCTTGTTCAAATCCCAATGTACAATGAAAGAGAGGTTTATCAGCTATCAATTGGTGCTGCATGTGAACTCTCTTGGCCTTCTGATAGAATCATCATACAAATTCTTGATGATTCAACTGACCCAACAATCAAGGAGTTGGTACAGGAAGAATGCCGTAGATGGCGAAACAAAGGTGTGAACATAAAGTATGAAGTTAGGGACAACAGAAATGGGTACAAAGCTGGTGCTCTAAAGGAGGGAATGAAACATAGTCATGTCCTACAATGTGAATATGTTGCCATCTTTGATGCTGATTTTCAACCTGAACCTGATTTCCTCTGCCAAACCATTCCTTTCCTTGTCAATAATCCTGAAATTGGTCTCGTTCAGGCTCGCTGGAAGTTTGTAAATGCGAATGAATGTTTGATGACGAGGATGCAAAAGATGTCACTTGATTATCATTTTACGGTTGAACAAGAAGTGGGGTCTTCTACTTATGCCTTCTTTGGCTTCAATGGGACTGCGGGTGTGTGGAGAATTTCGGCGTTGAATGAAGCTGGTGGGTGGAAAGATAGGACCACAGTTGAAGATATGGATCTATCAGTACGTGCAAGTCTCGAAGGATGGAAATTCTTATACCTCTCCAATATACAGGTTAAAAATGAATTGCCCAGTACTTTAAATGCCTATAGATACCAACAACATCGATGGTCATGTGGACCGGCCAATCTTTTCAGGAAAATGATTATGGAGATTCTCACAAACAAGAAAGTGTCTTTGTGGAAGAAAACATATATGGTTTACAGTTTTTTCTTTGTCCGGAAGATTGTGGTTCACATAAACACATTTGTGTTATATTGCATTGTGTTACCTGCAACTGTTATGGTGCCTGAGATTGTGGTCCCTAAATGGGGAACTGTTTATATCCCTACCATCATCACCCTCCTAAACGCGGTTGCAGCACCAAGGTCATTGCATTTAGTTGTATTTTGGATTCTCTTTGAGAATACCATGTCTTTAAATCGAGCAAAGGCAACAATTATTGGTATACTAGAGACTAGTAGAGTGAATGAATGGATTGTCACAGAAAAACTTGGAAATGCTCTTAAGGACCAAGATAGTAAAGGACTTGAAAAGCTTCAATTTAAGATTGGAAACAGGATTCACATGTCAGAACTTTTTGTTGGATTCTACCTCCTATTTTGTGGCTGCTATGATCTTATGTATGGGAAAAATTACTACTACATATTCCTATATATGCAAGCAATTGCTTTCTTCCTCCTGGCCTTTGGATATGTTGGAACTTTTGTTCCCAACTCCTAG 1569 0.3894 MEVFQVASEGVGMQLAFIWRKIREPLIVPMLRAAVFICLSMSLMILVEIVYMGIVICLVKLFKRTPEKRYKWETIKDDVELENSNYPIVLVQIPMYNEREVYQLSIGAACELSWPSDRIIIQILDDSTDPTIKELVQEECRRWRNKGVNIKYEVRDNRNGYKAGALKEGMKHSHVLQCEYVAIFDADFQPEPDFLCQTIPFLVNNPEIGLVQARWKFVNANECLMTRMQKMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLSVRASLEGWKFLYLSNIQVKNELPSTLNAYRYQQHRWSCGPANLFRKMIMEILTNKKVSLWKKTYMVYSFFFVRKIVVHINTFVLYCIVLPATVMVPEIVVPKWGTVYIPTIITLLNAVAAPRSLHLVVFWILFENTMSLNRAKATIIGILETSRVNEWIVTEKLGNALKDQDSKGLEKLQFKIGNRIHMSELFVGFYLLFCGCYDLMYGKNYYYIFLYMQAIAFFLLAFGYVGTFVPNS* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2078 522 PANTHER - 1 521 - -
Mtr1g2078 522 Pfam Glycosyl transferase family group 2 180 372 IPR001173 -
Mtr1g2078 522 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN A1 1 521 - -
Mtr1g2078 522 CDD CESA_CaSu_A2 87 323 - -
Mtr1g2078 522 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 78 306 IPR029044 -
Mtr1g2078 522 SUPERFAMILY Nucleotide-diphospho-sugar transferases 83 365 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2078 Mtr-Chr1 30724666 30729017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2078 2 521 Miscellaneous Gene Families AT5G03760 71.977 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2078 K13680 - gmx:100782772 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3188 7 48862116 48867980 Mtr1g2078 1 30724666 30729017 PCT