Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1520 ATGACTATCACCACCACTCCTCCGTTAGAGAATCTTGAAGAGGATACTGAGATGCTTGTTCCTAACTCTGATGCTGTTGTTGTTGAAGGTCCTCAACCTATGGAAGTTCAAGCAGAAAACACAAGTACAGTTGATGCTGTGGCAGTTGAAGATCCGCCAATTGGGAGATTCACATGGACTATTGACAATTTTTCGAGGCTTCCAAAGAAACATTATTCCGATGTTTTCACTGTTGGCGGCTATAAATGGCGGATACTGATCTTTCCGAAGGGGAACAATGCTGAACATCTGTCAATGTATATAGATGTTGCAGATGCAGGGTCAATGCCTTATGGTTGGACTAGATTTGCACAGTTCAGCTTAACTGTGGTCAATCAGGTTCACAGTAAATATTCCGTCAGAAAAGAAACACAGCATCAGTTTAATGCGCGTGAAAGTGATTGGGGTTTCACTAATTTCATGCCTCTTGCTGAATTGTATGATCCTAGTAGAGGCTATGTTGTGGAAGACAGATGCATACTTGAGGCTGATGTGAATGTGCGCAAAGATCTTGATTACTGGGCACATGACTCAAAAAAAGAAACTGGTTGTGTCGGTTTGAAAAACCAAGGAGCTACTTGTTACATGAATTCTCTTCTTCAGACACTGTATCACATTCCTTATTTCAGAAAGGCTGTGTACCATATGCCCACGACTGAAAATGATATGCCATCTGGGAGCATCCCTCTGGCATTACAGAGTTTGTTTTACAAGTTGCAGTATAATGACAGCAGTGTATCAACAAAAGAGTTAACCAAATCTTTTGGATGGGATACTTATGATTCATTCATGCAGCATGATGTCCAAGAACTTAACAGGGTTCTCTGTGAAAAGCTAGAAGACAAAATGAAGGGAACTGTTGTGGAAGGCACTATACAGAAGTTGTTTGAAGGCCACCATATGAACTATATTGAATGCATGAATGTGGATTATAAATCAACAAGAAAAGAATCATTTTATGATCTTCAGCTTGATGTCAAAGGCTGTACAGATGTGTATGCTTCTTTTGATAAGTATGTGGAAGTAGAACAGCTTGAGGGTGATAACAAGTATCATGCAGAGCAGTATGGTTTACAGGAAGCAAGAAAGGGTGTATTGTTCATTGATTTTCCACCTGTTCTTCAGCTTCAGTTAAAACGGTTTGAGTATGATTTTGCACGAGACACTATGGTAAAGATCAATGACCGCTATGAGTTCCCCTTACAATTAGATCTTGATAGGGATGATGGGAAGTATCTATCTCCTGACGCAGACAGAAGTATTCGCAACCTTTATACACTTCACAGTGTTTTGGTTCACAGCGGTGGAGTTCATGGTGGACACTACTATGCTTATATACGCCCGACTCTTTCAAATCAGTGGTTTAAATTCGATGATGAACGGGTAACAAAAGAAGATACAAACAGGGCTTTAGAAGAGCAGTATGGTGGTGAAGAAGAGTTACCTCTTACAAATCCTGGGTTCAACAACTCTCCTTTTAAATTTACAAAGTACTCAAATGCTTACATGCTTGTCTATGTTCGTGAAAGTGACAAGGATAAGATAATTTGTAATGTGGATGAGAAGGACATTGCCAGGCACCTTCAAATAAGGTTAAAGAAAGAACAAGAGGAAAAAGAGAAGAAGAAGAAGGAAAAGGCTGAGGCTCATTTGTACACCATTGTAAAGATTGCCCGTGATGATGATCTGCACGAGCAAATCGGAAAGGATATTTTCTTTGATCTTGTGGATCATGATAAAGTGCGAAGTTTTCGCATTCAAAAACAGATGCCATTTACCATTTTCAAGGAAGAAGTTGCGAAAGAGTTTGGCATACCAGTTGAGTACCAACGTTTTTGGATGTGGGCAAAGCGCCAAAACCATACATTTCGGCCAAGTAGACCAGTGACAGCTCAGGAGGAAGCACAGGCAGTTGGACAGTTGAGGGAAGTTTCCAATAAGGCAAATAATGGAGAGTTAAAGTTATTTTTGGAAATAGAAATGGGGCAGGATTTGCGTCCTATTCCTCCTCCTGAGAAGCTGAAAGAGGAGTTGTTGCTATTCTTTAAACTTTATGAACCTTCAAGTCAGAAGCTTAGGTATGTTGGGAGGCTTTTCGTGGTGGGTAGCAGAAAGCCAGTAGATATATTGAAGAAACTAAATGAAATGGCTGGATTTGATCCGGATGAAGAAATTGATTTGTTTGAGGAAATAAAATTTGATCCCAAAATCATGTGCGAACATGTTGACCAGAAGTCCACTTTTCGTGACAATCAGCTAGAGGATGGTGATATTATTTGCTTTCAGAAGTCTCCTCCAGCTGGCGATGGACAGCAGCAATATTGTTATCCAGATGTTCCTTCATTCTTTGAATATGTGCAAAACCGTCAAGTTGTTCGCTTTAGGTTTTTGGAGAAACCCAAGGAAGATGAGTTCAGTCTTGAGCTGTCAAAGCTTCACACTTATGATGATGTTGTAGAAAGAGTCTCCCAACATCTTGGTTTAAATGATCCTTCTAAAATCAGACTTACATCTCATAACTGCTACTCCCAGCAACCTAAACCACAGCCTATCAAGTACCGAGGAGTGGATCATTTGTCTGAAATGCTGGTTCACTACAATCAGGCTTCTGATATTCTATACTATGAAGTACTGGATATTCCTCTTCCGGAATTGCAAAACCTAAAAACGCTGAAGATTGCTTTCCATCATGATGCCAAGGATGAAGTTAGTACTGTGATGATAATTAGATTACAGAAGCACAGTACTGTGGCAGATGTAATTAATGATCTAAAATCAAAGGTAGATTTATCACATCCTGATGCGGAACTTAGATTGGTTGAAGTATTTAATCACAAGATCTATAAGATTTTTCATGTCAATGAGAAGATTGAGAATATTAATGATCATTATTGGACATTACGAGCAGAGGAGATCCCGGAAGAAGAGAAAAGCCTTGGTCCTCATGATCGGATGATACATGTTTATCATTTTTTGAAAGATACTGCTCAAAATCAGATGCATGTTCAGAACTTTGGAGACCCTTTCTTCTTGGTTATCCGTGAGGGTGAGACTTTAGCTGATGTCAAATTGCGGGTACAAAAGAAGTTGCAAGTTCCAAATGAGGAGTTTTTGAAGTGGAAGTTTGCGTTTGTCTCACTTGGACGTCCTGAGTACCTTCAAGATTCAGATATTATTTCCAGTCGGTTTCAGAGAAGGGACATCTACGGCGCATGGGAGCAATATCTTGGACTGGAGCACACTGACAATTCACCTAAAAGATCATACACAGCCAATCAGAATCGTCATGCGTTTGATAAACCAATAAAAATCTACAACTAG 3360 0.3979 MTITTTPPLENLEEDTEMLVPNSDAVVVEGPQPMEVQAENTSTVDAVAVEDPPIGRFTWTIDNFSRLPKKHYSDVFTVGGYKWRILIFPKGNNAEHLSMYIDVADAGSMPYGWTRFAQFSLTVVNQVHSKYSVRKETQHQFNARESDWGFTNFMPLAELYDPSRGYVVEDRCILEADVNVRKDLDYWAHDSKKETGCVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYNDSSVSTKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECMNVDYKSTRKESFYDLQLDVKGCTDVYASFDKYVEVEQLEGDNKYHAEQYGLQEARKGVLFIDFPPVLQLQLKRFEYDFARDTMVKINDRYEFPLQLDLDRDDGKYLSPDADRSIRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSNQWFKFDDERVTKEDTNRALEEQYGGEEELPLTNPGFNNSPFKFTKYSNAYMLVYVRESDKDKIICNVDEKDIARHLQIRLKKEQEEKEKKKKEKAEAHLYTIVKIARDDDLHEQIGKDIFFDLVDHDKVRSFRIQKQMPFTIFKEEVAKEFGIPVEYQRFWMWAKRQNHTFRPSRPVTAQEEAQAVGQLREVSNKANNGELKLFLEIEMGQDLRPIPPPEKLKEELLLFFKLYEPSSQKLRYVGRLFVVGSRKPVDILKKLNEMAGFDPDEEIDLFEEIKFDPKIMCEHVDQKSTFRDNQLEDGDIICFQKSPPAGDGQQQYCYPDVPSFFEYVQNRQVVRFRFLEKPKEDEFSLELSKLHTYDDVVERVSQHLGLNDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSEMLVHYNQASDILYYEVLDIPLPELQNLKTLKIAFHHDAKDEVSTVMIIRLQKHSTVADVINDLKSKVDLSHPDAELRLVEVFNHKIYKIFHVNEKIENINDHYWTLRAEEIPEEEKSLGPHDRMIHVYHFLKDTAQNQMHVQNFGDPFFLVIREGETLADVKLRVQKKLQVPNEEFLKWKFAFVSLGRPEYLQDSDIISSRFQRRDIYGAWEQYLGLEHTDNSPKRSYTANQNRHAFDKPIKIYN* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1520 1119 SMART math_3 56 159 IPR002083 GO:0005515
Mtr1g1520 1119 Pfam Ubiquitin-specific protease C-terminal 886 1098 IPR029346 -
Mtr1g1520 1119 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 623 876 IPR024729 -
Mtr1g1520 1119 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 6 1046 - -
Mtr1g1520 1119 Pfam MATH domain 61 180 IPR002083 GO:0005515
Mtr1g1520 1119 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 438 455 IPR018200 GO:0004843|GO:0006511
Mtr1g1520 1119 Gene3D - 683 801 - -
Mtr1g1520 1119 SUPERFAMILY TRAF domain-like 55 185 - -
Mtr1g1520 1119 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 54 193 IPR008974 GO:0005515
Mtr1g1520 1119 Coils Coil 538 563 - -
Mtr1g1520 1119 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 199 214 IPR018200 GO:0004843|GO:0006511
Mtr1g1520 1119 Gene3D Cysteine proteinases 194 523 - -
Mtr1g1520 1119 CDD MATH 55 178 IPR002083 GO:0005515
Mtr1g1520 1119 Gene3D - 802 899 - -
Mtr1g1520 1119 SUPERFAMILY Cysteine proteinases 193 550 IPR038765 -
Mtr1g1520 1119 CDD peptidase_C19C 196 524 - -
Mtr1g1520 1119 PANTHER UBIQUITIN-SPECIFIC PROTEASE 12-RELATED 6 1046 - -
Mtr1g1520 1119 Pfam Ubiquitin carboxyl-terminal hydrolase 198 519 IPR001394 GO:0004843|GO:0016579
Mtr1g1520 1119 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 198 522 IPR028889 -
Mtr1g1520 1119 ProSiteProfiles MATH/TRAF domain profile. 54 178 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1520 Mtr-Chr1 18850225 18872539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1520 305 477 Miscellaneous Gene Families AT2G24640 28.652 9.89e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1520 K11838 - jre:109019926 1883.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3359 7 50726009 50728740 Mtr1g1520 1 18850225 18872539 PCT