Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0639 ATGGAACATCACATCTATTATGGTGCCTCTTCTTCCTCCTCTTCTTCCTCACGCCATCTTCAAACAAAGTCACAGTCTCGTGACCACCATGAAATCCATCCTTCCACCACCACGTACCACCGTTGCCTCACAACTCTCAAAGGCCAAACTTCTTCTTACACATCATGTCTTGCTCTCTCCGGGAAATTCCTCTACACAGGTTCTTCTGACAGAGAAATCAGATCATGGAATCGCTCTGTTTTGCTCTCTGATTCATACCCTGAAAATTGCATCACCAACATAATAGCACTTTCAGGAAAAGGTGCAGTGAAATCCATAGTAGCTCAATCTGATAATAAGCTTTTCACTGCCCACCAAGATCACAAAATCAGAGTATGGAAGATCATCAACAACCACGAAACAGACCAACAAGAATACACCCATGTAGCCACACTTCCAACGTTAGGTGATCGAGCTTCCAAGATTCTAATCCCAAAAAACCATGTCCAGATCAGAAGGCACAAGAAATGCACGTGGGTTCATCACGTGGACACAGTCTCTGCTCTAGCCTTGTCCAAAGACGAGACCTTTCTCTACTCAGTTTCATGGGACAGAACAATGAAAGTATGGAGAACCAGAGATTTCACCTGTTTAGAATCAGTAACCAACGCACACGATGATGCCATTAATGCGGTCGCAGTTTCCAACGATGGACATGTATACACAGGATCAGCAGATAAGAAAATCAAAGTGTGGAAGAAAGAAGAAGGAGAAAAGAAGCATACTTTGGTAGATACATTAGAGAGACACGATTCTGGGGTCAATGCCTTGGCTCTGAGTAGTAATGGGTGTGTGTTATATTCTGGTGCAAGTGACAGATCGATACTGGTTTGGGAAAAAGATGATGAAGGAGAAGGAGAAGAAGGTGGGAAAATGAGGTTGGTGGGGGAACTAAAAGGGCATAGTAAGGCTATATTGTGTTTAGATGTGGTTTGGGAATTGGTGTGTAGTGGTTCTGCGGATAGAACAATTCGGATATGGAGAGGGAATGATGAGAGAGAGTATTCGTGTTTGGCAGTTTTGGAAGGTCATAGAGGAGCGATTAAGTGTATAACGGCGGCCATTGATCGTTGTGATTCGTCTGAAGCTTATTTTCTAGTGTATAGTGGCAGTTTAGACTGTGACATTAAGATGTGGCAGGTTGTTGTTCCTGTTTCTTAG 1200 0.4333 MEHHIYYGASSSSSSSSRHLQTKSQSRDHHEIHPSTTTYHRCLTTLKGQTSSYTSCLALSGKFLYTGSSDREIRSWNRSVLLSDSYPENCITNIIALSGKGAVKSIVAQSDNKLFTAHQDHKIRVWKIINNHETDQQEYTHVATLPTLGDRASKILIPKNHVQIRRHKKCTWVHHVDTVSALALSKDETFLYSVSWDRTMKVWRTRDFTCLESVTNAHDDAINAVAVSNDGHVYTGSADKKIKVWKKEEGEKKHTLVDTLERHDSGVNALALSSNGCVLYSGASDRSILVWEKDDEGEGEEGGKMRLVGELKGHSKAILCLDVVWELVCSGSADRTIRIWRGNDEREYSCLAVLEGHRGAIKCITAAIDRCDSSEAYFLVYSGSLDCDIKMWQVVVPVS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0639 399 SUPERFAMILY WD40 repeat-like 41 394 IPR036322 GO:0005515
Mibi13g0639 399 Gene3D - 9 156 IPR015943 GO:0005515
Mibi13g0639 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 292 IPR001680 GO:0005515
Mibi13g0639 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 255 IPR001680 GO:0005515
Mibi13g0639 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 246 - -
Mibi13g0639 399 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 395 IPR045182 -
Mibi13g0639 399 FunFam BnaA09g28200D protein 162 250 - -
Mibi13g0639 399 SMART WD40_4 87 127 IPR001680 GO:0005515
Mibi13g0639 399 SMART WD40_4 39 77 IPR001680 GO:0005515
Mibi13g0639 399 SMART WD40_4 207 246 IPR001680 GO:0005515
Mibi13g0639 399 SMART WD40_4 253 292 IPR001680 GO:0005515
Mibi13g0639 399 SMART WD40_4 304 341 IPR001680 GO:0005515
Mibi13g0639 399 SMART WD40_4 347 393 IPR001680 GO:0005515
Mibi13g0639 399 SMART WD40_4 165 204 IPR001680 GO:0005515
Mibi13g0639 399 Pfam WD domain, G-beta repeat 257 291 IPR001680 GO:0005515
Mibi13g0639 399 Pfam WD domain, G-beta repeat 349 392 IPR001680 GO:0005515
Mibi13g0639 399 Pfam WD domain, G-beta repeat 41 77 IPR001680 GO:0005515
Mibi13g0639 399 Pfam WD domain, G-beta repeat 210 246 IPR001680 GO:0005515
Mibi13g0639 399 Pfam WD domain, G-beta repeat 173 203 IPR001680 GO:0005515
Mibi13g0639 399 Pfam WD domain, G-beta repeat 307 340 IPR001680 GO:0005515
Mibi13g0639 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 292 - -
Mibi13g0639 399 Gene3D - 160 396 IPR015943 GO:0005515
Mibi13g0639 399 MobiDBLite consensus disorder prediction 1 34 - -
Mibi13g0639 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 213 IPR001680 GO:0005515
Mibi13g0639 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 340 IPR001680 GO:0005515
Mibi13g0639 399 CDD WD40 42 393 - -
Mibi13g0639 399 MobiDBLite consensus disorder prediction 7 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0639 Mibi-ChrMibi13 8348783 8349982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0639 217 393 Acyl Lipid Metabolism Gene Families AT3G18860 28.415 5.99e-09 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0217 09 2738381 2739589 Mibi13g0639 13 8348783 8349982 CCT
Mibi09g0217 09 2738381 2739589 Mibi13g0639 13 8348783 8349982 ECH
Mibi13g0639 13 8348783 8349982 Mibi13g0639 13 8348783 8349982 ECH