Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0217 ATGGAGTTACATCGATCATCTTCTTCATCCAACCATGTTCAATCTACACTAATAACTTCTCTGTCTTCCCAACGCAGCCTTGTGTCAGTTCCATCCTTGAACTCTCATTCTCACCACCATGCCTCATCAGCCTATTATCAGTGTCTCGCAACTCTCAAAGGTCACACATCCTATGTATCCTGTATAGCCCTTGCAGGGGAATTCCTCTACACTGGATCATCTGATAGAGAAATTAGATCCTGGAATCACTCTCCTTTCAATTCTGATGAACAGTCAAATTCTTCATTGGTCACAGCAGGGAAAGGTGCAGTCAAGTCCCTAATAATTCAATCTGATAAGCTCTTCAGTGCTCACCAAGACTACAAAATCAGAGTATGGAAAATTAACACAGACGAACCTGACCGCCATAAGTACACACGTTTAGCCACACTTCCAACTTTTGGTGATAGAGCCACTAAGGTATTGAACCCAAAGAACCATGTTCAAATTAGGAGGCACAAAAAATGCACATGGGTTCACCATGTGGATACAGTCTCTGCTTTGGCCTTATCCAGGGATGAGACCTTGCTTTACTCTGTATCATGGGATCGTACAGTCAAAATCTGGCGAACCAGAGATTTCACTTGTTTAGAATCAGTGAACAACGCACATGTTGATGCCATAAATGCCATAGCAGTTTCTGATGATGGTTATGTGTACACTGGATCAGCAGATAAGAAGATCAAGGTGTGGAAGAAGAAAGAAGAGGAAGGAGAGAATAAGAAGAAGAAGAAGAAACATTTTCTGGTTGATACTTTAGAGAAGCACAATTCTGGGATTAATGCCTTGGCTCTGAGCAGTGATGGGTGTTTGCTATATTCAGGTGCTTGTGACAGATCTATATTGGTTTGGGAAAAGGAAGATGAAGATGGGAAAATGAGGCTGGTGGGTGCGCTTAGGGGGCACAGCAAGTCTATATTATGCTTAGCTTTGGTATCAGATTTTGTATTTAGTGGTTCTGCTGATAAAACAATCAGAATGTGGAGAGGTGTTCATGGTGATTATTCTTGTTTGGCAGTTTTAGAAGGGCATAATGGTCCTGTTAAGTGTTTAACTGCAGCTATTGATCGTTGCAATAGTCCTTCGTCTGAAGAATCTAATTTTATAGTTTACAGTGGAAGTTTGGACTGTGACATTAAGGTGTGGCAGATCATTGTACCTGTTCTATAG 1209 0.4136 MELHRSSSSSNHVQSTLITSLSSQRSLVSVPSLNSHSHHHASSAYYQCLATLKGHTSYVSCIALAGEFLYTGSSDREIRSWNHSPFNSDEQSNSSLVTAGKGAVKSLIIQSDKLFSAHQDYKIRVWKINTDEPDRHKYTRLATLPTFGDRATKVLNPKNHVQIRRHKKCTWVHHVDTVSALALSRDETLLYSVSWDRTVKIWRTRDFTCLESVNNAHVDAINAIAVSDDGYVYTGSADKKIKVWKKKEEEGENKKKKKKHFLVDTLEKHNSGINALALSSDGCLLYSGACDRSILVWEKEDEDGKMRLVGALRGHSKSILCLALVSDFVFSGSADKTIRMWRGVHGDYSCLAVLEGHNGPVKCLTAAIDRCNSPSSEESNFIVYSGSLDCDIKVWQIIVPVL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0217 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 202 - -
Mibi09g0217 402 Pfam WD domain, G-beta repeat 172 202 IPR001680 GO:0005515
Mibi09g0217 402 Pfam WD domain, G-beta repeat 47 82 IPR001680 GO:0005515
Mibi09g0217 402 Pfam WD domain, G-beta repeat 349 395 IPR001680 GO:0005515
Mibi09g0217 402 Pfam WD domain, G-beta repeat 215 245 IPR001680 GO:0005515
Mibi09g0217 402 Pfam WD domain, G-beta repeat 264 297 IPR001680 GO:0005515
Mibi09g0217 402 Pfam WD domain, G-beta repeat 308 341 IPR001680 GO:0005515
Mibi09g0217 402 Gene3D - 254 400 IPR015943 GO:0005515
Mibi09g0217 402 Gene3D - 32 142 IPR015943 GO:0005515
Mibi09g0217 402 CDD WD40 48 396 - -
Mibi09g0217 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 52 82 IPR001680 GO:0005515
Mibi09g0217 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 341 IPR001680 GO:0005515
Mibi09g0217 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 245 IPR001680 GO:0005515
Mibi09g0217 402 SUPERFAMILY WD40 repeat-like 35 397 IPR036322 GO:0005515
Mibi09g0217 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 341 - -
Mibi09g0217 402 Gene3D - 143 253 IPR015943 GO:0005515
Mibi09g0217 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 212 IPR001680 GO:0005515
Mibi09g0217 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 245 - -
Mibi09g0217 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 52 82 - -
Mibi09g0217 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Mibi09g0217 402 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 397 IPR045182 -
Mibi09g0217 402 SMART WD40_4 89 127 IPR001680 GO:0005515
Mibi09g0217 402 SMART WD40_4 305 342 IPR001680 GO:0005515
Mibi09g0217 402 SMART WD40_4 45 82 IPR001680 GO:0005515
Mibi09g0217 402 SMART WD40_4 259 298 IPR001680 GO:0005515
Mibi09g0217 402 SMART WD40_4 347 396 IPR001680 GO:0005515
Mibi09g0217 402 SMART WD40_4 164 203 IPR001680 GO:0005515
Mibi09g0217 402 SMART WD40_4 206 245 IPR001680 GO:0005515
Mibi09g0217 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0217 Mibi-ChrMibi09 2738381 2739589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0217 168 402 Acyl Lipid Metabolism Gene Families AT3G18860 24.291 2.34e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0217 09 2738381 2739589 Mibi13g0639 13 8348783 8349982 CCT
Mibi09g0217 09 2738381 2739589 Mibi13g0639 13 8348783 8349982 ECH
Mibi09g0217 09 2738381 2739589 Mibi09g0217 09 2738381 2739589 ECH