Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0573 ATGAAGGCAACCATAAGGTACTTAGCAGGAATCGCTGGCCCAAGTGGTTTTGGCTCTAATTCCACAGCGGAGCAAGTCACTCTTCACTCTTCTTTTTCAACTCCTCCTTCTCATCTCACTGCTCTCATCACCGGGGCGACTTCTGGGATTGGAGCTGAAACTGCGAGAGTGTTGGCGAAGAGAGGAGTGAGAGTGGTGATTGGTGCGAGAAACATGAAGAAGGCAAGAGAAGTGAGAGAGAATATCATGAAAGAGAGTCCAAATGCTGAGATTATTTTGCTTGAGATTGATCTCAGCTCTTTTGCCTCTGTCCAGCGATTTTGTTCTCACTTCTTGTCTCTCCAAATTCCACTCAACGTTCTCATAAACAATGCTGGGATATACTCTCAGGAATTGGAGTTCTCGGAGGAGAAAATAGAGATGACATTTGCAACAAATTATCTAGGACATTTTTTGTTAACGGAAATGTTATTGGAGAGAATGATAGAAACAGCAGAGAAGACGGGCATTGAAGGAAGAATAGTAAACGTGTCTTCAATGATCTATAGTTGGGTTAAAAGAGAAGCTTTTCAATTCAAGGACATGATTAAAGGAAGAAACTATAATGGCACGCGTGCATATGCTCAGTCAAAATTGTCCAGTATATTGCATGCCAAGGAAATGGCCAAACAGCTAAAGGCAAGAAATGCAAGAGTAACTATCAATGTGGTCCATCCTGGCATTGTGAAGACTGCGATCATGAAAGCTCACAAGAGTCTCATTACAGATTCCTTCTTCTTCATCACATCTAAGTTACTAAAATCGACTTCTCAGGGAGCAGCAACGACATGTTATGTAGCGTTGAGCCCACAAATAGAAGGAGTGAGTGGGAAATATTTTTTGGATTGCAATGAGAGTAACTGTTCAAGTTTAGCCAATGACGATTCTGAAGCTTTCAAGCTATGGAACAGCACACGTTCCCTTCTTCACAAACGTTTACGTAAAGCTTCAGTTTGA 996 0.4177 MKATIRYLAGIAGPSGFGSNSTAEQVTLHSSFSTPPSHLTALITGATSGIGAETARVLAKRGVRVVIGARNMKKAREVRENIMKESPNAEIILLEIDLSSFASVQRFCSHFLSLQIPLNVLINNAGIYSQELEFSEEKIEMTFATNYLGHFLLTEMLLERMIETAEKTGIEGRIVNVSSMIYSWVKREAFQFKDMIKGRNYNGTRAYAQSKLSSILHAKEMAKQLKARNARVTINVVHPGIVKTAIMKAHKSLITDSFFFITSKLLKSTSQGAATTCYVALSPQIEGVSGKYFLDCNESNCSSLANDDSEAFKLWNSTRSLLHKRLRKASV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0573 331 PANTHER RETINOL DEHYDROGENASE 14 321 - -
Mibi13g0573 331 Gene3D - 36 327 - -
Mibi13g0573 331 PRINTS Glucose/ribitol dehydrogenase family signature 40 57 IPR002347 -
Mibi13g0573 331 PRINTS Glucose/ribitol dehydrogenase family signature 166 182 IPR002347 -
Mibi13g0573 331 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Mibi13g0573 331 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Mibi13g0573 331 PRINTS Glucose/ribitol dehydrogenase family signature 116 127 IPR002347 -
Mibi13g0573 331 CDD retinol-DH_like_SDR_c_like 40 315 - -
Mibi13g0573 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 299 IPR036291 -
Mibi13g0573 331 Pfam short chain dehydrogenase 40 181 IPR002347 -
Mibi13g0573 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 116 127 IPR002347 -
Mibi13g0573 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 172 180 IPR002347 -
Mibi13g0573 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0573 Mibi-ChrMibi13 7510517 7513288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0573 42 249 Acyl Lipid Metabolism Gene Families AT3G55290 30.047 6.33e-14 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0286 09 3472070 3475267 Mibi13g0573 13 7510517 7513288 CCT
Mibi13g0573 13 7510517 7513288 Mibi13g0573 13 7510517 7513288 ECH