Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi13g0560 ATGGATCCTAACCCTGGAACCTTCCCTATCCTCTCCTACGTGATGAGTCGCCTCCCTTCTCTCCCCTCTTCCTCCAAACCTCCCCCAACCTCTCAATTCGACATCGAACAACCCCACCCTCCGCCGCCACACCCTCATTCATCTTCCTCGTCCGATTCCGAAATTGTCTCCAAAATGCCCCACCTTTCTGATCCCAAACTCTTAGCTTCCATGACCCGTGCTGTCTCCGAAGTTGCCCAGTATCGATCAGTCCTCAAGCTCATTGGGGAGAGACCTGACCATGAAGCCGTCGATCGTGCGAAGGCCAAGCTTGCAGATATTGAATCCCTTCTGTCCAAACAACTGGAGGAGATTGTGCTTTCCCCTAGGCCTGAGAATGTTGACATCCTTCAATGGCGTGCTCATCAGGCTGAGAAGGAGAAGGAGTGTAGGGAATTGGCGGAGAAAGAGAAGCGGCCTTATAAATCGTTGATTCAGTTGGATGAGATGCATGATGCTTATGAGAAAATGCTTTTGGATGCTGAGAAGAGGCTTGTGGAGATTTATGAGTCTGGTGGGAAGGTTGGTGATAATGGTGAGGGTGAGAATGATGAGGAGAGTGTTAGGGAGGAGGTTAATGAAGAGGTTGTGGGGATATTACAGGATGCTTATGGAAAGGGGATGGAAAGATTGGATCTTTCAGGGCGGCGTTTAAGGTTGTTGCCTGAGGCCTTTGGCCGAATTCCTGGCTTGGTTGTGCTCGATCTTTCCAACAATCAGCTCGAGGCGATACCTGACTCAATAGCTGGGTTGCAAAATCTTGAGGAGCTAAATGTCTCTTCAAATCTTTTGGAGTCTCTTCCAGATTCAATTGGCTTATTACAAAGGTTGAAATTTCTTAATGTCTCTGGGAACAAGCTAAATGCCCTTCCTGATTCCATCTGTCACTGCAGGTCATTGGTGGAGCTTGATGTAAGCTTTAATTGTCTGACATATTTGCCTACAAACATTGGATACGAACTGGTGAACTTGCAGAAGCTGTCAATTCAGTTGAACAAGATTCGGTCACTTCCATCCTCTGTTTGTGAGATGAGGGCCCTGCGCTATCTAGATGCTCATTTTAATGAGCTTCATGGGCTTCCTATTGCAATAGGGAAGTTGACTAATCTTGAGGTACTCAACCTGAGCAGTAATTTCAGTGACCTCAGAGAACTTCCCGATACATTTGGTGATCTGACTAACCTCAGGGAATTGGATCTCAGCAACAATCAGATTCATGCACTTCCTGATACATTTGGCCGCCTTGACAATCTGGTCAAGCTCAACTTGGAGCAGAACCCTCTGGAATTGCCACCAAAGGAAATTGTAAATGAAGGGGTTGAAGCCATAAAAACTTTTATGGCTAAGAGGTGGGTTGATATATTGCTCGAGGAAGAAAGGAAAAGCCGTGAAGTCCAGGAACTGGCAGAGGCTGGCTGGTTAACACGAAGCACCTCCTGGTTGAAGAATTATGTTTCTAATGTTTCTGGAAGTGTTAATGAGTATCTGGGATCTGCCATAGGATCACCTAGGACTCCAAGAGATCCTTGTCTTGATCAGCAGCTTTAA 1587 0.465 MDPNPGTFPILSYVMSRLPSLPSSSKPPPTSQFDIEQPHPPPPHPHSSSSSDSEIVSKMPHLSDPKLLASMTRAVSEVAQYRSVLKLIGERPDHEAVDRAKAKLADIESLLSKQLEEIVLSPRPENVDILQWRAHQAEKEKECRELAEKEKRPYKSLIQLDEMHDAYEKMLLDAEKRLVEIYESGGKVGDNGEGENDEESVREEVNEEVVGILQDAYGKGMERLDLSGRRLRLLPEAFGRIPGLVVLDLSNNQLEAIPDSIAGLQNLEELNVSSNLLESLPDSIGLLQRLKFLNVSGNKLNALPDSICHCRSLVELDVSFNCLTYLPTNIGYELVNLQKLSIQLNKIRSLPSSVCEMRALRYLDAHFNELHGLPIAIGKLTNLEVLNLSSNFSDLRELPDTFGDLTNLRELDLSNNQIHALPDTFGRLDNLVKLNLEQNPLELPPKEIVNEGVEAIKTFMAKRWVDILLEEERKSREVQELAEAGWLTRSTSWLKNYVSNVSGSVNEYLGSAIGSPRTPRDPCLDQQL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi13g0560 528 Gene3D Ribonuclease Inhibitor 345 462 IPR032675 -
Mibi13g0560 528 PRINTS Leucine-rich repeat signature 244 257 - -
Mibi13g0560 528 PRINTS Leucine-rich repeat signature 405 418 - -
Mibi13g0560 528 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 154 316 - -
Mibi13g0560 528 MobiDBLite consensus disorder prediction 19 62 - -
Mibi13g0560 528 SUPERFAMILY L domain-like 216 445 - -
Mibi13g0560 528 SMART LRR_typ_2 405 427 IPR003591 -
Mibi13g0560 528 SMART LRR_typ_2 241 263 IPR003591 -
Mibi13g0560 528 SMART LRR_typ_2 380 404 IPR003591 -
Mibi13g0560 528 SMART LRR_typ_2 287 310 IPR003591 -
Mibi13g0560 528 SMART LRR_typ_2 428 451 IPR003591 -
Mibi13g0560 528 SMART LRR_typ_2 334 357 IPR003591 -
Mibi13g0560 528 SMART LRR_typ_2 311 333 IPR003591 -
Mibi13g0560 528 SMART LRR_typ_2 264 286 IPR003591 -
Mibi13g0560 528 SMART LRR_bac_2 405 424 - -
Mibi13g0560 528 SMART LRR_bac_2 310 329 - -
Mibi13g0560 528 SMART LRR_bac_2 287 306 - -
Mibi13g0560 528 SMART LRR_bac_2 264 283 - -
Mibi13g0560 528 SMART LRR_bac_2 241 260 - -
Mibi13g0560 528 SMART LRR_bac_2 334 353 - -
Mibi13g0560 528 SMART LRR_bac_2 380 401 - -
Mibi13g0560 528 FunFam Plant intracellular Ras-group-related LRR protein 2 329 501 - -
Mibi13g0560 528 MobiDBLite consensus disorder prediction 33 47 - -
Mibi13g0560 528 FunFam Plant intracellular Ras-group-related LRR protein 9 139 325 - -
Mibi13g0560 528 Coils Coil 157 177 - -
Mibi13g0560 528 Gene3D Ribonuclease Inhibitor 186 343 IPR032675 -
Mibi13g0560 528 ProSiteProfiles Leucine-rich repeat profile. 407 428 IPR001611 GO:0005515
Mibi13g0560 528 ProSiteProfiles Leucine-rich repeat profile. 266 287 IPR001611 GO:0005515
Mibi13g0560 528 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515
Mibi13g0560 528 Pfam Leucine rich repeat 222 277 IPR001611 GO:0005515
Mibi13g0560 528 Pfam Leucine rich repeat 311 370 IPR001611 GO:0005515
Mibi13g0560 528 ProSiteProfiles Leucine-rich repeat profile. 243 265 IPR001611 GO:0005515
Mibi13g0560 528 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi13g0560 Mibi-ChrMibi13 7361897 7364520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi13g0560 223 447 Receptor kinase-like Gene Family AT5G07180 31.489 1.06e-10 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0307 09 3765371 3767999 Mibi13g0560 13 7361897 7364520 CCT
Mibi13g0560 13 7361897 7364520 Mibi13g0560 13 7361897 7364520 ECH