Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g0844 ATGGCCGAAGAGAGCGTTATTGAGTCTTGCGATTTGCCTGTGAAGAGGCAGAGGGAAGAAGAAGAAGGAGAAGAGAATGGGGTTTCTGCTTCTCCTGTTTCCATGGAGACAGACATTAATGGTGAGAAGCAGCCTGGTTTTATGTCTTCTGTGATTCCTGGGTGGTTCTCTGAATTTAGCTCAATGTGGCCTGGAGAAGCACACTCTTTAAAAGTTGAAAAGATCTTATTTCAAGGGAAGTCTGATTACCAGAATGTGATAATCTTCCAGTCATCATCATATGGAAAGGTTCTTGTTTTGGATGGTGTGATTCAGCTCACTGAAAGAGATGAATGTGCCTACCAGGAAATGATCACACATCTTCCTCTTTGCTCAATTCCAAATCCCGAAAAGGTTTTGGTTATTGGCGGGGGAGATGGTGGGGTCTTGCGGGAAGTCGCACGGTATTCTTCTGTCAAGCAGATAGACATTTGCGAAATTGACAAAATGGTTGTTGATGTCTCCAAACAATTTTTCCCTGAAGTAGCTGTAGGTTTTGATGATCCACGCGTGAGACTTAATATTGGTGATGGTGTGGTTTTTTTGAAAGATGTTCCAGCAGGAACTTATGATGCAATCATAGTTGACTCATCTGACCCTATAGGTCCTGCTCAGGAGCTTTTTGAAAAACCCTTTTTTGAGTTGGTTTCAAAAGCTCTTCGTCCTGGAGGAGTTGTAAGCACTCAGGCTGAAAGTATGTGGCTTCATATGCATATTATTGAGGGCATTGTTGATAATTGTCGCCAGATATTTAAAGGCTCTGTCGAATATGCTTGGACTTCAGTTCCTACGTACCCTAGTGGGGTAATCGGTTTTATGCTTTGCTCGACCGAAGGACCTCCTGTTGATTTCAAGCATCCAGTGAACTCCATAGATGCAAATGATAATAATCAGAAATCAGCAAGGCCACTGAAGTTTTACAACTCTGAGATTCATGCAGCGGCATTTTGCCTCCCATCATTTGCCCGGAAAGTGATCGATTCTAAAGCAACTTGA 1035 0.428 MAEESVIESCDLPVKRQREEEEGEENGVSASPVSMETDINGEKQPGFMSSVIPGWFSEFSSMWPGEAHSLKVEKILFQGKSDYQNVIIFQSSSYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPEKVLVIGGGDGGVLREVARYSSVKQIDICEIDKMVVDVSKQFFPEVAVGFDDPRVRLNIGDGVVFLKDVPAGTYDAIIVDSSDPIGPAQELFEKPFFELVSKALRPGGVVSTQAESMWLHMHIIEGIVDNCRQIFKGSVEYAWTSVPTYPSGVIGFMLCSTEGPPVDFKHPVNSIDANDNNQKSARPLKFYNSEIHAAAFCLPSFARKVIDSKAT 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g0844 344 PANTHER SPERMIDINE/SPERMINE SYNTHASE 46 342 IPR001045 GO:0003824
Mibi12g0844 344 FunFam Spermidine synthase 1 46 105 - -
Mibi12g0844 344 Pfam Spermine/spermidine synthase domain 111 298 - -
Mibi12g0844 344 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 290 IPR030374 -
Mibi12g0844 344 Gene3D Spermidine synthase, tetramerisation domain 39 107 IPR037163 -
Mibi12g0844 344 MobiDBLite consensus disorder prediction 9 25 - -
Mibi12g0844 344 Hamap Polyamine aminopropyltransferase [speE]. 54 340 IPR001045 GO:0003824
Mibi12g0844 344 MobiDBLite consensus disorder prediction 1 39 - -
Mibi12g0844 344 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 132 145 IPR030373 -
Mibi12g0844 344 TIGRFAM speE: spermidine synthase 55 334 IPR001045 GO:0003824
Mibi12g0844 344 PIRSF Spermidine_synth 43 344 IPR030668 GO:0006595
Mibi12g0844 344 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 340 IPR029063 -
Mibi12g0844 344 FunFam Spermidine synthase 1 106 344 - -
Mibi12g0844 344 CDD AdoMet_MTases 131 239 - -
Mibi12g0844 344 Pfam Spermidine synthase tetramerisation domain 54 108 IPR035246 -
Mibi12g0844 344 Gene3D Vaccinia Virus protein VP39 108 344 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g0844 Mibi-ChrMibi12 22277331 22280939 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g0844 12 22277331 22280939 Mibi10g1341 10 33966454 33970193 CCT
Mibi12g0844 12 22277331 22280939 Mibi12g0844 12 22277331 22280939 ECH