Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1341 ATGGCTTCTGACGGCGTTGTTGGGTCTATTGATTTTCCTGTTAAGAGGCAGAGAGAAGATGGAGAGAATGGTGTCTCTGCTTCAAATGTTCCTATGGAGGCTGATGGTAATGGTGTTTCAGCTGTGATTCCTGGGTGGTTCTCTGAAATTAGTCCAATGTGGCCTGGGGAAGCTCACTCTTTGAAGGTTGAAAAGATCTTGTTTAAAGGGAAGTCTGATTACCAGGATGTCATGGTCTTCCAGTCATCAACATATGGTAAAGTTCTTGTGCTGGACGGAGTAATTCAGCTAACTGAAAGGGATGAATGCGCCTACCAAGAGATGATCACCCATCTTCCTCTTTCCTCTATTCCAAATCCGAAGAAGGTTTTGGTTATTGGTGGAGGGGATGGTGGTGTCCTACGGGAAGTGTCACGCTATTCTTCAGTTGAGGAGATAGTCATTTGCGAAATTGACAAGATGGTAGTTGATGTATCCAAGCAATTTTTCCCTGAAGTAGCTGTAGGGTACGAAGATCCACGCGTGACACTTCATATTGGTGATGGAGTTGCATTCTTGAAGCAAGTTCCAGAAGGAACCTATGATGCAGTCATTGTGGACTCATCTGACCCTATAGGCCCTGCTCAAGAGCTTTTTGAGAAGCCCTTTTTTCAGTCGGTTGCTAGGGCTCTTCGTCCTGGGGGGGTTGTGTGTACTCAGGCAGAAAGTATATGGCTTCACATGAATATCATTGAGGGCATAGTCGCAAATTGTCGCCAAATATTCAAAGGCTCCGTCAACTATGCTTGGACTACAGTTCCAACATACCCAAGTGGGGTGATTGGTTTTATGCTTTGCTCAACTGAGGGGCCTCCTGTTGATTTCAAGCACCCCGTGAATCCTATAGATCAAAATCTCAGCGAGAAGTCAGACAGACCACTGAAATTTTACAACTCTGAGATTCATACAGCAGCTTTCTGCCTGCCATCCTTTGCCAAGAAGGTTATTGAATCGAAAGCAGAGTGA 1005 0.4517 MASDGVVGSIDFPVKRQREDGENGVSASNVPMEADGNGVSAVIPGWFSEISPMWPGEAHSLKVEKILFKGKSDYQDVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLSSIPNPKKVLVIGGGDGGVLREVSRYSSVEEIVICEIDKMVVDVSKQFFPEVAVGYEDPRVTLHIGDGVAFLKQVPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVVCTQAESIWLHMNIIEGIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDQNLSEKSDRPLKFYNSEIHTAAFCLPSFAKKVIESKAE 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1341 334 FunFam Spermidine synthase 1 97 334 - -
Mibi10g1341 334 Pfam Spermine/spermidine synthase domain 102 289 - -
Mibi10g1341 334 Gene3D Spermidine synthase, tetramerisation domain 38 96 IPR037163 -
Mibi10g1341 334 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 281 IPR030374 -
Mibi10g1341 334 PIRSF Spermidine_synth 35 334 IPR030668 GO:0006595
Mibi10g1341 334 CDD AdoMet_MTases 122 233 - -
Mibi10g1341 334 Pfam Spermidine synthase tetramerisation domain 45 99 IPR035246 -
Mibi10g1341 334 PANTHER SPERMIDINE/SPERMINE SYNTHASE 38 332 IPR001045 GO:0003824
Mibi10g1341 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 330 IPR029063 -
Mibi10g1341 334 FunFam Spermidine synthase 1 37 96 - -
Mibi10g1341 334 Hamap Polyamine aminopropyltransferase [speE]. 45 330 IPR001045 GO:0003824
Mibi10g1341 334 Gene3D Vaccinia Virus protein VP39 97 334 IPR029063 -
Mibi10g1341 334 TIGRFAM speE: spermidine synthase 46 324 IPR001045 GO:0003824
Mibi10g1341 334 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 123 136 IPR030373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1341 Mibi-ChrMibi10 33966454 33970193 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g0844 12 22277331 22280939 Mibi10g1341 10 33966454 33970193 CCT
Mibi10g1341 10 33966454 33970193 Mibi10g1341 10 33966454 33970193 ECH