Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2421 ATGATGTGTTCCCTGAGCCGCAATGACTTGGAGAGGATTTTTGAGAAGCTGGACAAGAAGGGAGATGGTTGTGTTAGCCTTGAAAACATAAAGAGACTGATGGAGGATGTAGGCTTCAGTTTTGGAGCGGAGGAGGTTGAGACTATTGTGGGGAAGAAGAGTCTTAACTTGGATGAGTTCTTGACGTTTTGTGAGTCCATATCGAGTAGCAGTGGAGAGAGCAGGGGAGGTGAAGAAGAAGAAGAAGGAGAGCTGGTGAAGGCGTTTGAGGTATTTGACATGGATGGAGATGGATTCATAAGCAGCAAAGAGGTGGAGAGTGTGCTCAAGAGGCTTGGCTTGTGGGACCCCATGAGTTGCAGAGATTGTGCCTCCATGATTGGGGTTTATGACACCAATTCCGATGGCCTTCTTGATTTCCAGGAGTTTAAGAACATGATGTTTCTTACCATCTCTTGA 459 0.4641 MMCSLSRNDLERIFEKLDKKGDGCVSLENIKRLMEDVGFSFGAEEVETIVGKKSLNLDEFLTFCESISSSSGESRGGEEEEEGELVKAFEVFDMDGDGFISSKEVESVLKRLGLWDPMSCRDCASMIGVYDTNSDGLLDFQEFKNMMFLTIS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2421 152 Gene3D - 6 69 - -
Mibi08g2421 152 PANTHER CALCIUM BINDING PROTEIN 11 147 - -
Mibi08g2421 152 Gene3D - 72 150 - -
Mibi08g2421 152 SUPERFAMILY EF-hand 9 147 IPR011992 -
Mibi08g2421 152 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Mibi08g2421 152 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Mibi08g2421 152 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Mibi08g2421 152 CDD EFh 85 147 IPR002048 GO:0005509
Mibi08g2421 152 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Mibi08g2421 152 ProSiteProfiles EF-hand calcium-binding domain profile. 118 152 IPR002048 GO:0005509
Mibi08g2421 152 SMART efh_1 84 112 IPR002048 GO:0005509
Mibi08g2421 152 SMART efh_1 122 150 IPR002048 GO:0005509
Mibi08g2421 152 SMART efh_1 9 37 IPR002048 GO:0005509
Mibi08g2421 152 FunFam Calmodulin A 4 150 - -
Mibi08g2421 152 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2421 Mibi-ChrMibi08 41972564 41973022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2421 1 148 EF-hand Containing Proteins AT1G21550 41.830 6.17e-35 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2421 08 41972564 41973022 Mibi05g0292 05 2895736 2896194 CCT
Mibi08g2421 08 41972564 41973022 Mibi08g2421 08 41972564 41973022 ECH