Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1907 ATGACCAACCAAAGGCATATCTTACAATTTGTTGTCATCATAGTTTCCTCTGTTGCTTGTTATTGCACTTTGCAAAAGGACCCACATACCATTCATTCTGATGATTCACCGAATACAATTGATGATGGGACAATATTCAAGAACTTGATCAAGCAAAGCCCAAATGATCATTTGAGATTGAAGATATTGGATAAGTTGGTTGGTCCTTCCCCTTGGCTTAACACAGTTAATGTCAATGATTACGGAGCTGAAGGGGATGGTATCACTGATGACACAAAGGCATTCAAAAAGGCATGGAAAGTTGCATGCTCTTTTTCCGGGGAGACAGCTTCTCTTGTAGTTCCTCAGCAGAATTATCTGCTCAGGCCAATAAGATTCTCGGGGCCATGCAAATCTGACAATATCGCAGTGCAGATTTATGGAGTGCTTGAAGCGTCTGATGATCCTTCAGATTACAAACATGATCCCACACACTGGCTTGAGTTTACGAATGTGAAGAATCTATCAGTTGAAGGTGATGGAACCATCAATGGAAATGGAAACATATGGTGGAAAAACTCATGCAAAAGAAACAAAAAACTTCCCTGCAAAAATGCCCCTACGGCTTTGACGTTCTATAGGTGCAAGAATTTGGTGGTTGAGAAGTTGAAGGTAAAAGATGCACAACAAATTCACGTATCATTCCAGGACTCCATGTACGTTACAGCTTCAGATCTCACTGTGACTGCACCTCATGATAGTCCTAACACCGACGGAATTCATGTCACTAATACTCAAAACATCCAAATTTTAAACTCTGTTATAGGAACTGGAGATGATTGTATATCAATTGTAAGAGGATCCCGAAATGTAGAAGCTATGGATATAACGTGTGGACCAGGCCATGGTATCAGCATCGGAAGCTTAGGAGCCAAACAAGACGAAGCTTTTGTTTCTGACATAACAGTAAATGGAGCTAAGCTATCAGGAACCACAAATGGAGTAAGAATTAAAACATGGCAGGGTGGGTCTGGAAGTGCAAGCAATATAAAGTTCCAGAACATAGAAATGAACAATGTGACCTACCCCATAATAATAGACCAAAACTACTGTGACCAGAAGGCTCCATGCAAAGAACAGTACTCAGCTGTTCAGATTAAGAATGTGCTGTACCAGAACATAAAAGGCACGAGTGCTTCAGAAGTAAGCGTGAGGTTTGATTGCAGCGAGAACTTTCCATGCCAGGAGATTGTGATGCAGAACGTAGACTTGAAACTAAAAACTGGGGAGGCTACCAAAGCTTCATGTGACAATGTTAAAGTGTCCTACATTGGACATGTATCCCCTCGCTGCCCATAG 1338 0.4141 MTNQRHILQFVVIIVSSVACYCTLQKDPHTIHSDDSPNTIDDGTIFKNLIKQSPNDHLRLKILDKLVGPSPWLNTVNVNDYGAEGDGITDDTKAFKKAWKVACSFSGETASLVVPQQNYLLRPIRFSGPCKSDNIAVQIYGVLEASDDPSDYKHDPTHWLEFTNVKNLSVEGDGTINGNGNIWWKNSCKRNKKLPCKNAPTALTFYRCKNLVVEKLKVKDAQQIHVSFQDSMYVTASDLTVTAPHDSPNTDGIHVTNTQNIQILNSVIGTGDDCISIVRGSRNVEAMDITCGPGHGISIGSLGAKQDEAFVSDITVNGAKLSGTTNGVRIKTWQGGSGSASNIKFQNIEMNNVTYPIIIDQNYCDQKAPCKEQYSAVQIKNVLYQNIKGTSASEVSVRFDCSENFPCQEIVMQNVDLKLKTGEATKASCDNVKVSYIGHVSPRCP 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1907 445 SUPERFAMILY Pectin lyase-like 69 444 IPR011050 -
Mibi06g1907 445 SMART pbh1 340 361 IPR006626 -
Mibi06g1907 445 SMART pbh1 258 279 IPR006626 -
Mibi06g1907 445 SMART pbh1 311 332 IPR006626 -
Mibi06g1907 445 SMART pbh1 231 257 IPR006626 -
Mibi06g1907 445 Gene3D - 71 441 IPR012334 -
Mibi06g1907 445 Pfam Glycosyl hydrolases family 28 108 434 IPR000743 GO:0004650|GO:0005975
Mibi06g1907 445 PANTHER - 74 432 - -
Mibi06g1907 445 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Mibi06g1907 445 FunFam Polygalacturonase QRT2 69 445 - -
Mibi06g1907 445 ProSitePatterns Polygalacturonase active site. 288 301 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1907 Mibi-ChrMibi06 39552960 39555127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1907 75 444 Glycoside Hydrolase AT3G07970 57.682 8.28e-149 429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g1907 06 39552960 39555127 Mibi02g1023 02 10072946 10075282 CCT
Mibi06g1907 06 39552960 39555127 Mibi06g1907 06 39552960 39555127 ECH