Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1023 ATGACAGATATGGCCCTCCAAAAACATATTCTCACAGTTTTCTTAATGTTGTTCATCATCATTATTCCTTACGTCTCTTGTTATAATACTCAAGAGGAACCACTTAAACTATACGGTGATGGTGGCGATAATAATGAAGACTCGCCTTTAAACAACTTAATTCAGCAAAGCAAACAAGTCTTGAACTTGAATAGGTTTGTTAAGTTAGGTGCTACGTCTTCTTCACCATCAGTTGCCAAGGTTAGTGTGAATGGTTTTGGAGCTAAAGGGGATGGTAAAACTGATGACACACAGGCTTTCAATAAGGCATGGCAAGCTGCATGTTCTTCAGGAGGAGACGTAGTTCTTGAGGTGCCTTCCAATTATAATTATCTTCTCAAGCCTGTCAGATTCTCAGGTCCCTGCAAGTCTATAATTACTTTCCAGATTTCTGGGACACTTGAAGCATCAGAGAACTCATCGGACTACTCAAAAGACCCACAACACTGGCTTATGTTCGAGAATGTTCAGAATGTAACAATTCAAGGTGGTGGAACCATCAATGGAAATGGAGACACTTGGTGGAAAAACTCCTGCAAAACAAACCCAAGCCTTGCTGTGACTTTGTATGAGTGTGAGAATGTAATAGTAGAGAACTTGGTGATTAAAAATGCACAACAAATCCATGTGAACATTCAAGAGTCCACCAACATTGAGGTTTCTGGTGTTACAGTGAGTGCGCCAGAGGATAGCCCCAATACTGATGGAATTCATATCACCAAGACCAAAATTATCAAAATCTCTAACTCCGTTATAGCCACAGGAGACGATTGTTTGTCAATAGAGAGTGGAACCCAAGATTTACTAGCCACGAACATAACCTGCGGACCCGGCCATGGTATCAGTATCGGAAGCTTAGGGGAGACCGGAACCGAGGAAGTTGTGTCGGGAATAACAGTGAATGGAGCTAAGCTTTCTGGAACTACAAATGGAGTTAGAATTAAGACATGGCAGGGAGGGGCAGGAAGTGCAAGCAATATCAAGTTTCAAAATATTGCCATGGAAAATGTGACTAACCCCATAATCATAGACCAGAACTACTGTGACCAGAACACCCCATGCAAACAAGAGAAGTCAGCAGTGAAGATTAGGAATGTGTTGTACGAGAACATAAAAGGAACAAGTGCTTCAGATATGGCAGTAAGCTTGAATTGCAGCCAAAGCTTTCCATGTGAGGGAATTGTGTTGCAGAACATAAATCTACAACGTGAACAAGAAGGACAGATTCCTAAAGCTTCATGCCAAAGTGCTCACTTGTCCTACGTTGGATCTGTTTCCCCACGTTGCCCTTAA 1332 0.4189 MTDMALQKHILTVFLMLFIIIIPYVSCYNTQEEPLKLYGDGGDNNEDSPLNNLIQQSKQVLNLNRFVKLGATSSSPSVAKVSVNGFGAKGDGKTDDTQAFNKAWQAACSSGGDVVLEVPSNYNYLLKPVRFSGPCKSIITFQISGTLEASENSSDYSKDPQHWLMFENVQNVTIQGGGTINGNGDTWWKNSCKTNPSLAVTLYECENVIVENLVIKNAQQIHVNIQESTNIEVSGVTVSAPEDSPNTDGIHITKTKIIKISNSVIATGDDCLSIESGTQDLLATNITCGPGHGISIGSLGETGTEEVVSGITVNGAKLSGTTNGVRIKTWQGGAGSASNIKFQNIAMENVTNPIIIDQNYCDQNTPCKQEKSAVKIRNVLYENIKGTSASDMAVSLNCSQSFPCEGIVLQNINLQREQEGQIPKASCQSAHLSYVGSVSPRCP 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1023 443 Gene3D - 66 439 IPR012334 -
Mibi02g1023 443 SMART pbh1 308 329 IPR006626 -
Mibi02g1023 443 SMART pbh1 205 224 IPR006626 -
Mibi02g1023 443 SMART pbh1 255 276 IPR006626 -
Mibi02g1023 443 SMART pbh1 228 254 IPR006626 -
Mibi02g1023 443 SMART pbh1 337 358 IPR006626 -
Mibi02g1023 443 SUPERFAMILY Pectin lyase-like 75 442 IPR011050 -
Mibi02g1023 443 ProSitePatterns Polygalacturonase active site. 285 298 IPR000743 GO:0004650|GO:0005975
Mibi02g1023 443 FunFam Polygalacturonase QRT2 67 443 - -
Mibi02g1023 443 PANTHER - 81 428 - -
Mibi02g1023 443 Pfam Glycosyl hydrolases family 28 108 417 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1023 Mibi-ChrMibi02 10072946 10075282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1023 4 442 Glycoside Hydrolase AT3G57510 51.663 1.56e-152 438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g1907 06 39552960 39555127 Mibi02g1023 02 10072946 10075282 CCT
Mibi02g1023 02 10072946 10075282 Mibi02g1023 02 10072946 10075282 ECH