Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0948 ATGGGTTTTTCTAGATCATCGGGTTCCATGATTCTGCTTATGTTCATGGTCTTTTCCGTTTCTTCAGCCCTCGACATGTCCATAATCTCCTACGATCGGACCCACCCCGACAAGTCAACAGGAAGAACAGATGACGAGGTCATGGCAATATACGAGCACTGGCTTGTACAACATGGAAAGTCCTACAATGCTCTGGGCGAGAAGGAGAAGAGGTTCGAGATTTTTAAGGATAATCTTAGGTTCATCGATGAGCACAACTCTGAGGATCGGACCTATAAAGTTGGGTTGAATCGATTCGCCGATCTTACCAACGAGGAATATAGGGAAAAGTATCTGGGAACCAAGATCGATCCTAAGAGGAGGGTTTCTAAGACCAGGAGTAACCGTTATGCTTTTCAGGTCGGTGATAAATTGCCCGAATCTGTTGATTGGCGGAAGGAAGGTGCGGTTGTCGAAGTCAAGGATCAAGGAAGTTGTGGGAGTTGCTGGGCATTCTCAACCATAGCTGCAGTGGAAGGAATAAACAAGTTAGTGACAGGCGATCTGATCTCACTATCTGAGCAAGAACTGGTGGATTGTGATACAAACTATAATGAAGGGTGCAATGGGGGATTAATGGACTATGCCTTTGAGTTCATCATCAACAATGGGGGCATTGACACCGAAGAGGATTATCCTTACCGTGCTGTTGATGGCCAGTGTGACCAATATAGGAAAAATGCCAAAGTTGTGTCAATTGATGGCTATGAGGATGTTCCTGCCAATGATGAGAAAGCATTGCAAAAAGCTGTTGCAAATCAACCAGTGAGCGTTGCAATTGAAGCTGGCGGAAGGGAATTTCAGTTATATGTATCTGGTGTATTTACAGGAAGATGTGGTACACAATTAGATCATGGTGTTGCTGCTGTTGGTTATGGCACAGAAAATGGTGTGGATTACTGGATTGTGAGGAACTCCTGGGGATCGAGCTGGGGAGAGGAAGGGTACATTAGAATGGAGCGTAATGTGGGCAAAACCAACACAGGCAAGTGTGGCATCTCGATGGAGGCCTCCTATCCTACAAAGAAGGGCTTAAATCCCCCAAAACCTGGACCATCTCCTCCTTCACCGGTGAAGCCACCCACTGTTTGTGATAAATACTACAGCTGTCCAGAGAGCTCTACATGCTGCTGCGTTTATGAATATGGAAAGTATTGCTTTGCCTGGGGATGCTGTCCTCTTGAGGCTGCCACCTGCTGCGACGACCACTACAGTTGCTGCCCTCATGACTATCCAGTTTGTAACCTTGACGCTGGCACCTGTCTTATGAGCAAGAACAGCCCGTTTGGAGTGGATGCATTGAAGCGTATTCCAGCTAAACCTCACTGGGCATTTGCAGAGAAGAACAGGAGAATCAGTGCTTGA 1404 0.4658 MGFSRSSGSMILLMFMVFSVSSALDMSIISYDRTHPDKSTGRTDDEVMAIYEHWLVQHGKSYNALGEKEKRFEIFKDNLRFIDEHNSEDRTYKVGLNRFADLTNEEYREKYLGTKIDPKRRVSKTRSNRYAFQVGDKLPESVDWRKEGAVVEVKDQGSCGSCWAFSTIAAVEGINKLVTGDLISLSEQELVDCDTNYNEGCNGGLMDYAFEFIINNGGIDTEEDYPYRAVDGQCDQYRKNAKVVSIDGYEDVPANDEKALQKAVANQPVSVAIEAGGREFQLYVSGVFTGRCGTQLDHGVAAVGYGTENGVDYWIVRNSWGSSWGEEGYIRMERNVGKTNTGKCGISMEASYPTKKGLNPPKPGPSPPSPVKPPTVCDKYYSCPESSTCCCVYEYGKYCFAWGCCPLEAATCCDDHYSCCPHDYPVCNLDAGTCLMSKNSPFGVDALKRIPAKPHWAFAEKNRRISA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0948 467 SUPERFAMILY Cysteine proteinases 43 354 IPR038765 -
Mibi05g0948 467 Gene3D Cysteine proteinases 32 356 - -
Mibi05g0948 467 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 42 349 - -
Mibi05g0948 467 SMART Inhibitor_I29_2 51 107 IPR013201 -
Mibi05g0948 467 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Mibi05g0948 467 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Mibi05g0948 467 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Mibi05g0948 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Mibi05g0948 467 SMART GRAN_2 377 434 IPR000118 -
Mibi05g0948 467 FunFam Cysteine protease 1 27 356 - -
Mibi05g0948 467 SUPERFAMILY Granulin repeat 374 408 - -
Mibi05g0948 467 FunFam Cysteine protease 1 374 437 - -
Mibi05g0948 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Mibi05g0948 467 Gene3D Granulin 374 437 IPR037277 -
Mibi05g0948 467 SMART pept_c1 138 354 IPR000668 GO:0006508|GO:0008234
Mibi05g0948 467 CDD Peptidase_C1A 139 353 IPR039417 -
Mibi05g0948 467 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Mibi05g0948 467 Pfam Granulin 388 435 IPR000118 -
Mibi05g0948 467 Pfam Papain family cysteine protease 138 354 IPR000668 GO:0006508|GO:0008234
Mibi05g0948 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0948 Mibi-ChrMibi05 8823828 8826578 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1693 08 33627439 33631715 Mibi05g0948 05 8823828 8826578 CCT
Mibi05g0948 05 8823828 8826578 Mibi05g0948 05 8823828 8826578 ECH