Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0557 ATGAACGGTGGCGATGAGGAAATCGTAGCTCCGGCGAGTCCATCGCAGCCTTTGGAGTGGAAATTCTCTCAGGTTTTCGGCGAACGTACGGCCGGCGAAGAAGTTCAGGAAGTGGACATAATTTCTGCCATTGAATTTGACAAGTCCGGTGACCATCTAGCAACTGGTGATCGTGGTGGTCGGGTTGTTCTCTTTGAGAGGACTGATACTAAAGATCATGGTGAATCAAGACAGGATTTGGAGAGGATGGACTATCCTCTAAGTAGGCATCCTGAATTCCGTTATAAAACAGAGTTTCAGAGTCATGAACCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAGGAGAAAATCAACAAAATTAGATGGTGCCAGTCCGCTAATGGTGCCCTATTTCTTCTGTCCACAAATGACAAAACCATAAAGTTTTGGAAGGTCCAGGAAAAGAAGATCAAGAAACTGTCTGAAATGAATGTTGACCCTTCAAAAGCTATGGGAAATGGCTGTGTTGCTAGTTCCAGCAATTCAAATAATCCTAGGGAATATATTGCCAATGGAGGATCTCTGGATAATTCATGCAATCATCTAAGTGATGACTTCACCTTTCCATCTGGGGGCATTTCCTCGTTACGATTGCCTGTGGTAACCAGCCATGAGACTAGCCTGGTGGCTCGATGCCGTAGAGTATATGCCCATGCTCATGATTATCATATCAATTCTATTTCAAATAACAGTGATGGCGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATCAGTAATCAAAGTTTTAATATAGTTGATGTTAAGCCTGCAAACATGGAAGATTTGACTGAGGTTATAACATCAGCAGAGTTCCATCCTATGCATTGCAATACGTTGGCATACAGCAGTTCAAAGGGTTCAATTCGACTTGTTGACTTACGGCAATCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCTGGGTCAAGATCATTTTTTACAGAGATTATTGCTTCTATCTCAGACATAAAATTTTCAAAGGATGGAAGATATATTCTTAGCCGTGATTACATGACTCTAAAGTTATGGGACATTAATATGGATTCTGGTCCAGTTGCGGCTTTCCAGGTTCATGAGTACCTAAGACCTAAGCTATGTGATTTATATGAAAATGATTCAATTTTTGATAAGTTCGAGTGCTGTCTGAGTGGTGATGGATTGCGTGTTGCAACTGGTTCCTACAGTAACCTTTTCCGTGTGTTTGGTTGCACCCCGGGAAGTACTGAAGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGGCGACAAGTTGCTACCCCTTCAAGGCCTTCGAGATCACTTGGGAGTAGTTTAACACGGGTTGTAAGACGAGGAGCAGAAAGTGCTGGTGTTGATGCAAATGGGAATTCTTTTGATTTTACAACAAAGTTACTGCACCTAGCATGGCACCCAACTGAAAATTCAATTGCGTGTGCTGCTGCAAATAGCTTGTATATACATGATTTTTGTTCTGGACCGGCGGCATCTCTCTTCTTCCCTGTTCTTTTAGTTTTGGCATTCCCCATCTGA 1608 0.4204 MNGGDEEIVAPASPSQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGESRQDLERMDYPLSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANGALFLLSTNDKTIKFWKVQEKKIKKLSEMNVDPSKAMGNGCVASSSNSNNPREYIANGGSLDNSCNHLSDDFTFPSGGISSLRLPVVTSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPMHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVAAFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTPGSTEATTLEASKNPMRRQVATPSRPSRSLGSSLTRVVRRGAESAGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYIHDFCSGPAASLFFPVLLVLAFPI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0557 535 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 209 511 - -
Mibi04g0557 535 Gene3D - 15 195 IPR015943 GO:0005515
Mibi04g0557 535 SUPERFAMILY WD40 repeat-like 39 517 IPR036322 GO:0005515
Mibi04g0557 535 Pfam WD domain, G-beta repeat 345 370 IPR001680 GO:0005515
Mibi04g0557 535 Pfam WD domain, G-beta repeat 226 262 IPR001680 GO:0005515
Mibi04g0557 535 Gene3D - 322 522 IPR015943 GO:0005515
Mibi04g0557 535 PIRSF PPA2_B55 10 516 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Mibi04g0557 535 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 197 - -
Mibi04g0557 535 Gene3D - 220 321 IPR015943 GO:0005515
Mibi04g0557 535 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 16 513 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 232 246 IPR018067 -
Mibi04g0557 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 290 318 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 401 427 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 262 289 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 319 346 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 234 261 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 484 513 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 375 400 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 347 374 IPR000009 GO:0000159|GO:0019888
Mibi04g0557 535 SMART WD40_4 273 313 IPR001680 GO:0005515
Mibi04g0557 535 SMART WD40_4 223 262 IPR001680 GO:0005515
Mibi04g0557 535 SMART WD40_4 332 370 IPR001680 GO:0005515
Mibi04g0557 535 SMART WD40_4 105 145 IPR001680 GO:0005515
Mibi04g0557 535 SMART WD40_4 477 514 IPR001680 GO:0005515
Mibi04g0557 535 SMART WD40_4 31 66 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0557 Mibi-ChrMibi04 10883211 10891403 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi11g1342 11 32297377 32306365 Mibi04g0557 04 10883211 10891403 CCT
Mibi04g0557 04 10883211 10891403 Mibi11g1342 11 32297377 32306365 ECH
Mibi04g0557 04 10883211 10891403 Mibi04g0557 04 10883211 10891403 ECH