Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1506 ATGGTGGGTATCTTCTCCTTAGTTACTGGGATGCCTGGTCCCAGTGGGTTTGGATCTTCTTCCACTGCACAACAGGTTACTGAAGGAATTGATGCCACCAATCTCACTGCCATTGTCACTGGAGGAGCAAGTGGTATAGGGTTGGAGACATCAAGAGTCTTGGCTCTTCGAAAGGCCCACGTCATCCTTGCTGCGAGGAACATGGAGGCTGCAAAGGAAGCTAAACAGCTTATTCTGCAAGAAAATGAGTCTGCTCGAGTGGACATCCTCAAGCTTGACCTCTGCTCAGTCAAATCTATCAGATCATTTGTTGACAATTTCTTGGCTCTTGATCTCCCCCTCAACATCTTAATAAACAATGCTGGTGTTATGTTCTGCCCCTTCCAACTCTCTGAGGATGGGGTCGAGCTGCAATTTGCTACTAATCATCTTGGTCATTTCCTGTTGACAAACCTCCTCCTTGACAAAATGAAGCAAACTGCAAAAGAAAGTGGAATCGAGGGCAGGATCGTCAATTTGTCATCAATTGCCCATACCTACACTTATGAAGATGGCATTCGCTTTGATAACATCAATGATCAAATTGGATACTCTGACAAAAAAGCATATGGGCAGTCCAAGTTGGCCAACATATTGCACGCAAATGAGCTTTCTCGTCGCCTGAAGGAAGAGGGGGTGAACATTACGGCCAACTCAGTCCACCCAGGAGTTATAATGACTCCTCTCATGAGACATTCTTCCTTCCTTATGAATTTTCTCAAGGTATTCACCTTTTTCATATGGAAGAATGTCCCACAGGGAGCAGCAACTACATGTTACGTTGCTCTGCATCCAAGTGTGAAGGGTGTGAGTGGAAAGTACTTTCTGGATTGCAATGAGTATCAACCAAGTGCTTTGGCCACAGATGAAGTGTTAGGGAAGAAACTGTGGGATTTCAGCAACAAGTTGATCAACTCTATTTTAAAAGATTGA 972 0.4444 MVGIFSLVTGMPGPSGFGSSSTAQQVTEGIDATNLTAIVTGGASGIGLETSRVLALRKAHVILAARNMEAAKEAKQLILQENESARVDILKLDLCSVKSIRSFVDNFLALDLPLNILINNAGVMFCPFQLSEDGVELQFATNHLGHFLLTNLLLDKMKQTAKESGIEGRIVNLSSIAHTYTYEDGIRFDNINDQIGYSDKKAYGQSKLANILHANELSRRLKEEGVNITANSVHPGVIMTPLMRHSSFLMNFLKVFTFFIWKNVPQGAATTCYVALHPSVKGVSGKYFLDCNEYQPSALATDEVLGKKLWDFSNKLINSILKD 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1506 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Mibi02g1506 323 Gene3D - 25 321 - -
Mibi02g1506 323 PANTHER RETINOL DEHYDROGENASE 14 317 - -
Mibi02g1506 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Mibi02g1506 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Mibi02g1506 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Mibi02g1506 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Mibi02g1506 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Mibi02g1506 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Mibi02g1506 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Mibi02g1506 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Mibi02g1506 323 Pfam short chain dehydrogenase 36 182 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1506 Mibi-ChrMibi02 14998443 15002920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1506 17 296 Acyl Lipid Metabolism Gene Families AT3G46170 25.424 1.25e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1506 02 14998443 15002920 Mibi06g2329 06 43548670 43550513 CCT
Mibi02g1506 02 14998443 15002920 Mibi02g1506 02 14998443 15002920 ECH