LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo6g03768	ATGCTTAGATTCACTATCGAAGCAATCATGAGTGATGAAGGAGAAAGGACTTGTCCTCTTTGTGCTGAAGAGATGGATTTGACAGATCAGCAATTGAGACCATGCAAATGCGGCTACCAGATTTGTGTCTGGTGTTGGCATCACATAATGGACATGGCTGAGAAGGACGACACAGAGGGACGGTGCCCTGCATGTCGATCTCCATATGATAAGGAAAAGATTGTCGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAGTTCATATGGAAAGAAAGATGAAGAGCCAGAAAGCAAAGTCGAAATCATCTGACGGACGGAAGCAGCTCAGCAATGTGCGAGTTATTCGGCGGAATCTTGTTTACATAGTGGGATTGCCTCTCGATCTTGCTGATGAAGATCTTCTCCTGCGGCGAGAGTATTTTGGTCAATATGGGAAGGTCTTAAAAGTTTCAATGTCTCGAACGGCAGCTGGTGTTGTTCAGCAGTTTCCGAACAATACATGTAGTGTATATATTACTTATTCAAAGGAAGAAGAAGCAATTCGATGTATTCAAAATGTACATGGGTTTATTTTGGAGGATAGACCTTTAAGGGCTTGTTTTGGAACAACCAAATATTGTCATGCATGGCTCAGAAACATGCCTTGCAGCAATCCAGAATGTGTATATCTTCATGAGATTGGCTCTCAAGAAGACAGTTTCACAAAAGATGAAGTAGTTTCAGCATACACTAGAAGTCATATTCAACAAATTACTGGCGCTGCAACCAATATGGAACGGCGGTCAGGGAATGTATTGCCTCCTCCTTTGGATGATTGCACAAGCAACACTTCAGGGAAACCCACTGTAAAAATTTCTTCAAGTAACTCTGTTAGCACTGCAAGAGGTTTGCCTCCTAACGGAATTCCTGCAAAGCCTATGGCTCCTCATGCTGCATGGGGTTTGCGGGCTACAAATTGTCAACCAGCTGCTGGCGGTCCAACCGGACTGTCCAAGCCCAAGCCTGATTCAATCAGCAGCTCTCTACCTTTCTCCTTGGCTGTTGCAGGCACAGTTCAAGTTTCATTGCAGAGTGATACAATGAAGAGGCCTTTGTCAAGTGATGGGCGTCATAGTATAATGCCTGGAGCCAAAAATAATCGTGTGGATGTCCTGGCGAACGGGGGCGAAAAAACACTGGCTTCTGATGTTTCTCCTGCTCCTGTGAATTTGAACACCCAGCTGTCTTCTTTACCATTAGCCAGAGATAGTTGCCGAGGGTGTTGTACAACATCAAACACAACAAAGTCTATTGACGTCACAACAAATTCAATTGGCAGCTTTAGTCGTGGTGAAGCAATTACTGCTACCAATGAAGAGATTCAAAATTTGTCCAGTGAGGTGTCTTCTATTGACCTTGGTAGAAATGCCCAAAATGAACATTACAACATAACCAAACCTAGCAGCCCACCTCCTGATGATGTATTGGTTAAGTCTATGCAATCTCAAGGATCAGAATATAATGTTGACAAATATAGAGACGAAATAATTACAAATGCAGACAGTAAAGCCTCTATAGCAGATAATAAGGTCTGTAATTCAAAGGAACAATATGATTTGAAATTGGATTCTCAATCTGAGGTAGCATCAGGTTATGTTGAAGTAGAGGATGATGTGACATCTTTTGATAGTCAGAGACTTAAGGATCCAGAAGTTTGTAATTCTTATTTGCCTAACTCATCTTTCCCTCGCGTTGCAAGTCATAATAATACTCATCCTCTTTCGCATGGTGAACCTTGTAATGTTGTAAATGCTGGTTCTTTAGCCACAGATAACGAGGTTGGGTTTCAACCACTGTTACATGGATCTAATGCATTATGCAATGGCTATTCTGAGAAATTGGACAGCACCAGCTCTTACAGGTTGCTTCGTGATGAAAGGAATGATCATCACATTGGAAGATTAATTAGTGAAGCAGTTAATATTGGAAGTGATGCTGCTACAGATAAGGGAGAGAGTAGTATAATTTCAAATATATTGTCCATGGAATTTGATGCCTGGAATGACTCAGTATTGTCACCGCATAATTTGGCCAAGTTGTTAAGCGAAAGCACTGAAAGTCAGAATGGTCCGCTAAAGAAATCTAGTTCTTGTGTTCAAACCAATCAATCGAGATTTTCTTTTGCTAGACAAGAGGAATCCAAAATCCAAGCTTTTGCTGTGAATCCATCTCATGGTGCTAACCAACAATTTCTAAAGAGCGGTTCACTCATCCAAGATTTCGTAGAAACAACAGACTTTTCTTTGGACAAGATTGGTATTGCAAATGGCTATCCTGCTACTAATAACATTGAGGAATCTGAAAATATAGGCAGTGTTCAATTTGCTGCTTCTTTCAATAAGATTTCTGCTGTTCCAAAAACACAAATTACAGCGCCCCCAGGATTTTCAGCTCCAAGTAGGCCACCACCTCCTGGTTTTTCTTCTCATGAGAGAATGGGGCAGGCTTTTGACTCAACTTCTGGGAATTCATTGCTTGACCCTTCTTTCTTATGGAGAAATTCATATCAGACACCATCAACTGGGAATTTTGGTGGTGCTGGAGACATTGAATTTATGGATCCTGCTATTTTGGCTGTTGGTAAGGGGAGGCTTCAAGGTTCGCTAAACAGCCCAATGCTAGACATGCAATCCAATTACTCCCCACAGTTAAATTACTTTGAGAATGAGGCCAGACTTCAGTTATTAATGCAAAGATCTCTCTCACCACAACAAAACCATCGATTTTCGGAAATTGGGAACACCTTTTCTCATCTTGGTGATTCTTATGGCATTTCTTCACGAATAGATCAATCTCAAGTTAGTAATTTGGCATCATTTCCTCAATTGGCTCTCCAGCAGTCTAGAAATGCGGTCTTGTCAAATGGCAATTGGGATGGGTGGAATGAAATGCAGAATGGAAATAGTATGGGTATGGCTGAGCTTTTGAGAAACGAAAGACTTGGGTTTAGTAAGTTTCATAGAGGATATGATGATTCAAAATACCAGATGCCAAATTCTGGGGATCTATACAACAGGACATTTGGGATTTGA	3075	0.414	MLRFTIEAIMSDEGERTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVAEVHMERKMKSQKAKSKSSDGRKQLSNVRVIRRNLVYIVGLPLDLADEDLLLRREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVHGFILEDRPLRACFGTTKYCHAWLRNMPCSNPECVYLHEIGSQEDSFTKDEVVSAYTRSHIQQITGAATNMERRSGNVLPPPLDDCTSNTSGKPTVKISSSNSVSTARGLPPNGIPAKPMAPHAAWGLRATNCQPAAGGPTGLSKPKPDSISSSLPFSLAVAGTVQVSLQSDTMKRPLSSDGRHSIMPGAKNNRVDVLANGGEKTLASDVSPAPVNLNTQLSSLPLARDSCRGCCTTSNTTKSIDVTTNSIGSFSRGEAITATNEEIQNLSSEVSSIDLGRNAQNEHYNITKPSSPPPDDVLVKSMQSQGSEYNVDKYRDEIITNADSKASIADNKVCNSKEQYDLKLDSQSEVASGYVEVEDDVTSFDSQRLKDPEVCNSYLPNSSFPRVASHNNTHPLSHGEPCNVVNAGSLATDNEVGFQPLLHGSNALCNGYSEKLDSTSSYRLLRDERNDHHIGRLISEAVNIGSDAATDKGESSIISNILSMEFDAWNDSVLSPHNLAKLLSESTESQNGPLKKSSSCVQTNQSRFSFARQEESKIQAFAVNPSHGANQQFLKSGSLIQDFVETTDFSLDKIGIANGYPATNNIEESENIGSVQFAASFNKISAVPKTQITAPPGFSAPSRPPPPGFSSHERMGQAFDSTSGNSLLDPSFLWRNSYQTPSTGNFGGAGDIEFMDPAILAVGKGRLQGSLNSPMLDMQSNYSPQLNYFENEARLQLLMQRSLSPQQNHRFSEIGNTFSHLGDSYGISSRIDQSQVSNLASFPQLALQQSRNAVLSNGNWDGWNEMQNGNSMGMAELLRNERLGFSKFHRGYDDSKYQMPNSGDLYNRTFGI	1024

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo6g03768	1024	FunFam	RNA binding (RRM/RBD/RNP motifs) family protein	120	201	-	-
	Mepo6g03768	1024	ProSiteProfiles	Zinc finger RING-type profile.	18	66	IPR001841	-
	Mepo6g03768	1024	SUPERFAMILY	RNA-binding domain, RBD	113	199	IPR035979	GO:0003676
	Mepo6g03768	1024	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	119	205	IPR000504	GO:0003723
	Mepo6g03768	1024	MobiDBLite	consensus disorder prediction	268	340	-	-
	Mepo6g03768	1024	CDD	RRM_CNOT4	114	213	IPR034261	-
	Mepo6g03768	1024	MobiDBLite	consensus disorder prediction	270	297	-	-
	Mepo6g03768	1024	FunFam	RNA binding (RRM/RBD/RNP motifs) family protein	10	86	-	-
	Mepo6g03768	1024	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	121	199	IPR000504	GO:0003723
	Mepo6g03768	1024	SUPERFAMILY	RING/U-box	9	75	-	-
	Mepo6g03768	1024	CDD	mRING-HC-C4C4_CNOT4	17	67	IPR039515	-
	Mepo6g03768	1024	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	8	86	IPR013083	-
	Mepo6g03768	1024	SMART	rrm2_1	120	201	IPR003954	GO:0003676
	Mepo6g03768	1024	Gene3D	-	120	201	IPR012677	-
	Mepo6g03768	1024	MobiDBLite	consensus disorder prediction	804	835	-	-
	Mepo6g03768	1024	PANTHER	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	10	1018	IPR039780	GO:0004842\|GO:0030014
	Mepo6g03768	1024	Pfam	RING/Ubox like zinc-binding domain	18	70	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo6g03768	Mepo-Chr6	49830239	49838894	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo6g03768	K10643		-	gmx:100796804	1425.61

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo6g03768	6	49830239	49838894	Mepo6g03768	6	49830239	49838894	ECH
	Mepo2g01948	2	28431409	28438669	Mepo6g03768	6	49830239	49838894	PCT