Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03541 ATGACTAGGATGTCTTGTCTCTTGGGACTTTCTTTGTGTTTTTTGTTTGTTGGGTTAGTTGCTTCTTCTAAATTTGAGGAACTCTTCCAACCTGGTTGGGCTATGGACCATTTTGTCCATGAAGGAGATTTGCTTAAACTCAAACTTGACAATTATTCTGGTGCTGGATTTCAATCTAAGAGCAAGTATATGTTTGGGAAAGTTACTGTACATCTCAAACTTGTGGAGGGTGATTCTGCTGGAACTGTAACTGCTTTCTATATGTCATCTGAAGGTCCAAATCATAATGAATTTGATTTTGAGTTTTTGGGTAACACTACTGGTGAACCTTACTCAGTCCAAACCAATGTGTATGTGAATGGTGTTGGTAATAGGGAGCAAAGACTTAACCTATGGTTTGACCCTTCTAAGGATTTTCACACTTACTCAATCTTTTGGAACCAACGTCAAGTAGTGTTTCTAGTGGATGAGACACCAATAAGGGTACACACAAATTTGGAACACAAAGGAATTCCTTTCCCAAAAGACCAAGCAATGGGTGTATACAGTTCTATATGGAATGCAGATGATTGGGCAACACAAGGTGGTCGTGTGAAAACAGATTGGACTCATGCACCTTTCATTGCTACCTACAAAGATTTTGAGATCAATGCTTGTGAGGTTGCTGTGCCAGTGACATCAACTGAAAATGCTAAGAAATGTGCTAGTAGTGAAGATAAAAAATACTGGTGGGATGAACCAATGTTGAATGAACTCACTATTCATCAGAGTCATCAACTTATTTGGGTTAGGGCTAATCATATGGTCTATGATTATTGCGCCGATACCGCTAGGTTCCCGGCCATACCACTTGAATGTGTTCGTCACCACCACTAG 876 0.3984 MTRMSCLLGLSLCFLFVGLVASSKFEELFQPGWAMDHFVHEGDLLKLKLDNYSGAGFQSKSKYMFGKVTVHLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPSKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWTHAPFIATYKDFEINACEVAVPVTSTENAKKCASSEDKKYWWDEPMLNELTIHQSHQLIWVRANHMVYDYCADTARFPAIPLECVRHHH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03541 291 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 239 286 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Mepo6g03541 291 PRINTS Glycosyl hydrolase family 16 signature 55 73 IPR008264 GO:0004553|GO:0005975
Mepo6g03541 291 PRINTS Glycosyl hydrolase family 16 signature 113 126 IPR008264 GO:0004553|GO:0005975
Mepo6g03541 291 PRINTS Glycosyl hydrolase family 16 signature 131 148 IPR008264 GO:0004553|GO:0005975
Mepo6g03541 291 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 211 IPR000757 GO:0004553|GO:0005975
Mepo6g03541 291 CDD GH16_XET 21 286 IPR016455 GO:0010411|GO:0016762|GO:0042546
Mepo6g03541 291 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 289 IPR013320 -
Mepo6g03541 291 FunFam Xyloglucan endotransglucosylase/hydrolase 12 288 - -
Mepo6g03541 291 Gene3D - 16 291 - -
Mepo6g03541 291 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 23 286 IPR044791 GO:0004553
Mepo6g03541 291 Pfam Glycosyl hydrolases family 16 29 203 IPR000757 GO:0004553|GO:0005975
Mepo6g03541 291 PIRSF EndGlu_transf 1 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03541 Mepo-Chr6 47628359 47630613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03541 55 291 Glycoside Hydrolase AT4G03210 74.262 7.37e-140 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03541 K08235 - gmx:100527891 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g01440 2 21431283 21434789 Mepo6g03541 6 47628359 47630613 PCT