Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01871 ATGGCCAACACTCTATTCAGACGGACGTTAGCCAACAATGTCGACAACAACGTCCATACACACCCGATGAACGGAACAACAACTTCATCTTCCAAATCAACTTCATTCACCATGTTAGAACGTAGAAGAATCATGATGGTCTTTGTTTTTCTATGTGTTGCAGCACTTGGTTCGATTTTTTTGGTGCGGCAGAAGAATGTTTTGGTGTTGCTTGGGGAACAAGTTTGGGAGTCACCAAAGCTAAGACCTGTGGTATTCAATTTGACTGAGTTTGGTGGTGTTGGTGATGGTGTTACTCTTAATACTAAGGCTTTTGAAAGTGCTATTTCTGTTATATCCAAGTTTAGGAATAAGGGTGGTGCTCAGTTGAATGTGTCTCCTGGTTTATGGCTTACTGCACCTTTTAACCTAACAAGTCATATGACACTTTTTCTAGCTCATGGTGCTGTGATTCATGGAGTTCAGGATGAAAAGTATTGGCCATTGATGCCTGCATTGCCTTCATATGGGTATGGTAGAGAGCATCCTGGTCCGCGGTATAGCAGTTTGATTCATGGTCAAAATCTTACAGATGTTGTGATAACAGGGCATAATGGCACCATAGATAGACAAGGACGCACGTGGTGGACAAAATATCGCCAGAATCTTCTCAACCATACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTGATCTCAAATATTACTCTGCTTGACTCTCCTTTTTGGACTCTTCATCCATATGACTGCAAGAACGTTACAGTAAAAAATGTTACGATATTGGCTCCTGTAGATGATGCTCCAAATACTGATGGCATAGATCCTGGCAAGTATCTTTATTCTTGTGAAGATATGTTGATAGAAGATTGTTACATATGTGTCGGGGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCTAAGAATATAGTAATCCGAAACCTCGTTGTTCGTTCTAATGTCAGTGCTGGCATCTCAATAGGAAGTGAGATGTCTGGTGGAGTATCCAATATCACCATCGAGAACATTCTTGTATGGAAATCTAGACGTGCCATCAGGATCAAGACCGCACCTGGAAGAGGCGGATATGTTCGCCAAATAACTTACCGTAATCTAACTTTTAACAATGTCCGTAATGGAATTGTTATCAAAACCAATTACAATGAACACCCTGACACTCGATATGTCCCTACAGCGTTTCCAATTCTCAGAGACATAAGCTTCATCAATATTCGCGGCAAGGGAGTTCGTGTACCTGTACACATTCTAGGTAGTAAAGAGATTCCGGTTAGAAATGTGACTTTCAAGGATATGAAAGTTGGGATAACCTACAAACACAAGCATATTTTTCAGTGTGCTTTTGTGGATGGTCAGGTAATCGGGACAATCTTTCCAAAACCATGTACGAATTTAGATCAATACAATGAGCAAGGAATATTGGTTAAGCGTGCTGTCTCAGAGAATGTAACAGACGTCGATTATGAATTTTGA 1527 0.408 MANTLFRRTLANNVDNNVHTHPMNGTTTSSSKSTSFTMLERRRIMMVFVFLCVAALGSIFLVRQKNVLVLLGEQVWESPKLRPVVFNLTEFGGVGDGVTLNTKAFESAISVISKFRNKGGAQLNVSPGLWLTAPFNLTSHMTLFLAHGAVIHGVQDEKYWPLMPALPSYGYGREHPGPRYSSLIHGQNLTDVVITGHNGTIDRQGRTWWTKYRQNLLNHTRGPLVQIMWSSDIVISNITLLDSPFWTLHPYDCKNVTVKNVTILAPVDDAPNTDGIDPGKYLYSCEDMLIEDCYICVGDDAIAIKSGWDQYGIAYGKPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNITIENILVWKSRRAIRIKTAPGRGGYVRQITYRNLTFNNVRNGIVIKTNYNEHPDTRYVPTAFPILRDISFINIRGKGVRVPVHILGSKEIPVRNVTFKDMKVGITYKHKHIFQCAFVDGQVIGTIFPKPCTNLDQYNEQGILVKRAVSENVTDVDYEF 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01871 508 PANTHER PECTIN LYASE-RELATED 65 489 - -
Mepo6g01871 508 SMART pbh1 437 458 IPR006626 -
Mepo6g01871 508 SMART pbh1 376 397 IPR006626 -
Mepo6g01871 508 SMART pbh1 410 432 IPR006626 -
Mepo6g01871 508 SMART pbh1 285 306 IPR006626 -
Mepo6g01871 508 SMART pbh1 319 341 IPR006626 -
Mepo6g01871 508 SMART pbh1 347 368 IPR006626 -
Mepo6g01871 508 SMART pbh1 253 280 IPR006626 -
Mepo6g01871 508 Gene3D - 70 469 IPR012334 -
Mepo6g01871 508 Pfam Glycosyl hydrolases family 28 181 467 IPR000743 GO:0004650|GO:0005975
Mepo6g01871 508 SUPERFAMILY Pectin lyase-like 70 481 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01871 Mepo-Chr6 21531586 21535919 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01871 79 507 Glycoside Hydrolase AT3G42950 75.058 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01871 - - gmx:100800910 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01871 6 21531586 21535919 Mepo6g01871 6 21531586 21535919 ECH
Mepo1g00518 1 4929032 4933341 Mepo6g01871 6 21531586 21535919 PCT