Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00518 ATGATGGTGGAAACCTCAACATTAGGTCGGTTCCATCATCAAAGACTCGACTTTAAACGCTGCGTTCCAGCATTCATAACCTCACACAAGACCCTTTTCATGGTTCTATGGATCGCCGCTTTTTTATCGGTTTTTATATGGCAGAGAAACATGGTGGTTGGTGGGTTTATGGTTTTCAGTCGGGTTCCGGTCCGGCCGATTCCGAAGATGAGACCGTTGGTTTTTAATCTAACGGATTTTGGAGGTGTTGGTGATGGGGTTACTCTTAATACTGAAGCATTTGAGAGAGCTGTTTCTGCTATATCTAAATTCGGGAAGAAAGGTGGGGCCCAGTTGAATGTTCCTCCTGGTCGTTGGCTTACTGCACCTTTTAATCTTACCAGTCATATCACTCTCTTTCTAGCTCAAGATGCTGTTATTCTCGCCACTGATGATGAGAAGTATTGGCCACTAATGCCTCCATTGCCTTCGTATGGGTATGGAAGGGAGCGTCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAGAATCTTAAAGATGTTGTGATAACAGGGCATAATGGCACTATAAATGGACAAGGACAGGCATGGTGGAAAAAATTTCGCCAGAAGCGTCTCAACTATACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTAATCACTGATATTACTCTACGTGACTCTCCTTTTTGGACGCTCCATCCATATGACTGTAAAAACATCACAATAAAAGGTGTTACAATTTTGGCTCCTGTATTTGAAGCTCCAAACACCGACGGCATAGATCCTGACTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATAGCAATAAAGAGTGGTTGGGATCAGTATGGAATTGCTTATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGTATCTCAATAGGCAGTGAGATGTCTGGTGGGATATCCAATGTCACGGTGGAGAATCTTCTCGTGTGGGATTCTAGGCGGGGTGTGAGGATAAAGACTGCACCTGGACGAGGTGGATATGTGCGGCAAATAACTTATCGGAATATAACGTTTGAGAATGTCCGTGTTGGAATTGTGATGAAGACAGATTACAATGAGCACCCTGATGATGGATATGACCCTACAGCACTTCCAGTTATAAGAGACATTAGCTTCACCAATGTCTATGGCCATGGAGTTCGTGTGCCAGTACGTATTCACGGTAGTGAAGAGATTCCTGTGAGAAATGTAACTTTTCGTGACATGTCAGTTGGCTTAACCTACAAGAAGAAGCACATCTTTCAGTGTGCATTTGTACATGGCCGTGTAATAGGGACCATTTTCCCATCTCCATGCGAGAACCTTGATCGGTACAATGAGCAAGGACAACTGGTTAAACATTCCATGTCCCAGAACGTAACAGATATAGATTATGATTTTTGA 1482 0.4372 MMVETSTLGRFHHQRLDFKRCVPAFITSHKTLFMVLWIAAFLSVFIWQRNMVVGGFMVFSRVPVRPIPKMRPLVFNLTDFGGVGDGVTLNTEAFERAVSAISKFGKKGGAQLNVPPGRWLTAPFNLTSHITLFLAQDAVILATDDEKYWPLMPPLPSYGYGRERPGPRYGSLIHGQNLKDVVITGHNGTINGQGQAWWKKFRQKRLNYTRGPLVQIMWSSDIVITDITLRDSPFWTLHPYDCKNITIKGVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSMVSAGISIGSEMSGGISNVTVENLLVWDSRRGVRIKTAPGRGGYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPTALPVIRDISFTNVYGHGVRVPVRIHGSEEIPVRNVTFRDMSVGLTYKKKHIFQCAFVHGRVIGTIFPSPCENLDRYNEQGQLVKHSMSQNVTDIDYDF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00518 493 PANTHER PECTIN LYASE-RELATED 49 481 - -
Mepo1g00518 493 SUPERFAMILY Pectin lyase-like 65 466 IPR011050 -
Mepo1g00518 493 Gene3D - 63 454 IPR012334 -
Mepo1g00518 493 SMART pbh1 422 443 IPR006626 -
Mepo1g00518 493 SMART pbh1 361 382 IPR006626 -
Mepo1g00518 493 SMART pbh1 395 417 IPR006626 -
Mepo1g00518 493 SMART pbh1 304 326 IPR006626 -
Mepo1g00518 493 SMART pbh1 332 353 IPR006626 -
Mepo1g00518 493 SMART pbh1 242 269 IPR006626 -
Mepo1g00518 493 SMART pbh1 270 291 IPR006626 -
Mepo1g00518 493 Pfam Glycosyl hydrolases family 28 170 453 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00518 Mepo-Chr1 4929032 4933341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00518 10 492 Glycoside Hydrolase AT1G19170 74.747 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00518 - - gmx:100818529 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00518 1 4929032 4933341 Mepo1g00518 1 4929032 4933341 ECH
Mepo1g00518 1 4929032 4933341 Mepo6g01871 6 21531586 21535919 PCT