Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01437 ATGCTTGTGGCATTGCTCTTGCTTCTTGCATTGAGCAATGCCTTGAATGTTTATGGAGATGTTGAGATATGTCGTTTGAATCCTAAATTGGATCCTAGACCACACAGTGTCTCTATTTTGGAATTTGGTGCAGTTGGAGATGGTAAAACACTGAATACAATTGCATTCCAGAATGCAATTTTCTATCTCAAGTCATTTGCTGATAAGGGTGGTGCTCAGCTCTATGTGCCACCAGGACAATGGCTTACCGGAAGTTTCAATCTTACAAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGAATGTTATTGAAGCTTTACCTTCTTATGGCCGAGGGAAAGATGTTCCTGACAAAAGATACAAGAGCTTGATAAATGGTAACCAGTTGGAGGATGTGGTCATAACAGGCAATAATGGAACCATTGATGGCAATGGAATGGTTTGGTGGGACTGGTTTAAGTCTCATTCTCTTAACCACAGTCGTCCTCATCTTGTTGAAATTATATCATCTGATTTTGTGGTAGTTTCAAATCTTACATTCTTGAATGCTCCAGCATATAGCATCCACCCTGTTTATTGCAGCAATGTACATATTCAAAACATTTCAATCTCTACTCCTCCAGAATCCCCTTATACTGCTGGTATAGTACCAGATTCTTCTGATAATGTTTGTATAGAAGATTGTTTTGTTTCCATTGGTTTTGACGCAATTTCTCTCAAAAGTGGATGGGATCAGTACGGCATTAACTATGGAAGACCAAGTGAGAAAGTACATATAAGAAGGGTTCATCTTCGTGCATTTACCGGCTCTGCTATTTCATTTGGTACTGAAATGTCTGGTGGAATTTCAAAAGTCCTGATAGAGCATGTTAACATTTTCAACTCAAATAGTGGAATTGAGTTCAGAACAACCAAAGGAAGAGGTGGTTACATAAAAGAAATTGCTTTATCACACATAGAAATGGAAAATGTTTATACAGCAATTTCAGCCAAAGGTAATTCTGGTTCTCATCCTGATGACAAATTTGATCCAAAAGCACTTCCGCTTTTGGATCACATAACATTGAAGGATATAACTGGAAAAAATATTACAATCGCCGGAAGCTTGAGTGGCATAGAAGAATCACCCTTCACAAACATATGCCTTTCAAATATAACCTTGTCTACAAATTCCGTTTCTTCAAGTAAATGGGAATGTTCAAATGTCTCTGGATTTTCAGACTCGGTGTTGCCTAAACCTTGTCAAGAACTTAGTAACCCTTCAAATTCTTCTTCGTCATCGTGTTTCTACCTCATGAGTCTTGGTAAAAAAACTGCAGCGATTTAA 1359 0.3826 MLVALLLLLALSNALNVYGDVEICRLNPKLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGQWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWNVIEALPSYGRGKDVPDKRYKSLINGNQLEDVVITGNNGTIDGNGMVWWDWFKSHSLNHSRPHLVEIISSDFVVVSNLTFLNAPAYSIHPVYCSNVHIQNISISTPPESPYTAGIVPDSSDNVCIEDCFVSIGFDAISLKSGWDQYGINYGRPSEKVHIRRVHLRAFTGSAISFGTEMSGGISKVLIEHVNIFNSNSGIEFRTTKGRGGYIKEIALSHIEMENVYTAISAKGNSGSHPDDKFDPKALPLLDHITLKDITGKNITIAGSLSGIEESPFTNICLSNITLSTNSVSSSKWECSNVSGFSDSVLPKPCQELSNPSNSSSSSCFYLMSLGKKTAAI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01437 452 PANTHER PECTIN LYASE-RELATED 4 439 - -
Mepo6g01437 452 Gene3D - 24 420 IPR012334 -
Mepo6g01437 452 SUPERFAMILY Pectin lyase-like 31 428 IPR011050 -
Mepo6g01437 452 SMART pbh1 265 287 IPR006626 -
Mepo6g01437 452 SMART pbh1 135 161 IPR006626 -
Mepo6g01437 452 SMART pbh1 204 230 IPR006626 -
Mepo6g01437 452 SMART pbh1 293 314 IPR006626 -
Mepo6g01437 452 SMART pbh1 181 203 IPR006626 -
Mepo6g01437 452 SMART pbh1 231 252 IPR006626 -
Mepo6g01437 452 Pfam Glycosyl hydrolases family 28 129 414 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01437 Mepo-Chr6 15601082 15605047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01437 1 440 Glycoside Hydrolase AT3G16850 64.626 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01437 - - gmx:100777503 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01437 6 15601082 15605047 Mepo6g01437 6 15601082 15605047 ECH
Mepo1g00722 1 6911719 6915126 Mepo6g01437 6 15601082 15605047 PCT