Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03240 ATGGTCATGGACAAGGTGACTCAATATATACGTGTGTTCAACCACTTTGATGAAAATGGAGATGGCAAAATATCACCTTCGGAGCTGCGGCAATGTGTGGAGGCAATCGGGGTCAAGATGACGAATGAGGAGGCGGAAATGGCGGTTGAGCTTCTCGACTCGAACGGGGATGGGTTGGTTGGGTTGGATGATTTTGTGAAGTTTGTAGAGGGAGGGAAAGAGGAAGAGAAAGTGAATGACCTAAGAGAGGCTTTTAAGATGTATGAAATGGAGGGGTGTGGTTGCATCACACCAAAGAGTCTTAAGAGAATGCTTGGAAGATTGGGTGAATGTAGAAGTGTAGATGAATGCCAAGCTATGATTTCTCAATTTGACATTGATGGAGATGGGGTCCTTAGTTTTGATGAATTTAGGAGAATGATGCTTTAA 429 0.4382 MVMDKVTQYIRVFNHFDENGDGKISPSELRQCVEAIGVKMTNEEAEMAVELLDSNGDGLVGLDDFVKFVEGGKEEEKVNDLREAFKMYEMEGCGCITPKSLKRMLGRLGECRSVDECQAMISQFDIDGDGVLSFDEFRRMML 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03240 142 Pfam EF-hand domain pair 94 141 IPR002048 GO:0005509
Mepo5g03240 142 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Mepo5g03240 142 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Mepo5g03240 142 FunFam Putative calcium-binding protein CML19 4 72 - -
Mepo5g03240 142 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Mepo5g03240 142 Gene3D - 72 142 - -
Mepo5g03240 142 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Mepo5g03240 142 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Mepo5g03240 142 Gene3D - 3 71 - -
Mepo5g03240 142 ProSiteProfiles EF-hand calcium-binding domain profile. 112 142 IPR002048 GO:0005509
Mepo5g03240 142 SUPERFAMILY EF-hand 7 142 IPR011992 -
Mepo5g03240 142 Pfam EF-hand domain pair 10 69 IPR002048 GO:0005509
Mepo5g03240 142 CDD EFh 80 141 IPR002048 GO:0005509
Mepo5g03240 142 SMART efh_1 44 72 IPR002048 GO:0005509
Mepo5g03240 142 SMART efh_1 116 142 IPR002048 GO:0005509
Mepo5g03240 142 SMART efh_1 80 108 IPR002048 GO:0005509
Mepo5g03240 142 SMART efh_1 8 36 IPR002048 GO:0005509
Mepo5g03240 142 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 80 141 - -
Mepo5g03240 142 CDD EFh 11 69 IPR002048 GO:0005509
Mepo5g03240 142 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
Mepo5g03240 142 FunFam Calcium-binding protein CML38 73 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03240 Mepo-Chr5 39521573 39522205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03240 4 141 EF-hand Containing Proteins AT1G76650 47.826 2.31e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03240 K13448 - cave:132180329 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g00799 3 11251229 11251846 Mepo5g03240 5 39521573 39522205 PCT