Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00799 ATGGCCAAGGTAAGCCAATATGAGCGTGTGTTCAACCGTTTTGATGAAAATGGAGATGGTAAGATATCACCGGCTGAGCTGCGACAATGTGTTGAGGCGATCGGTGATGAGAAGTTATCGGCGGAGGATGTAGAGGCGGCCGTGGCAATTCTGGACTCCGATGGTGATGGATTGTTGGGGTTTGATGATTTTGTGAAGTTTGTGGAGGGTGCAAAAGAGGAAGAAAAAGTGAATGACTTAAAAGAGGCTTTTAAGTTGTATGAGATGGATGGAAGTGGTTGCATCACACCTAGGAGTCTTAAAAGAATGCTTAGCAGGTTAGGTGATTCTAGAAGTATAGATGAGTGTCAACTTATGATCTCTAAGTTTGATCTCGATGGGGATGGGAAAATCAGTTTTGATGAATTTAAGGTCATGATGTTGTAA 426 0.4272 MAKVSQYERVFNRFDENGDGKISPAELRQCVEAIGDEKLSAEDVEAAVAILDSDGDGLLGFDDFVKFVEGAKEEEKVNDLKEAFKLYEMDGSGCITPRSLKRMLSRLGDSRSIDECQLMISKFDLDGDGKISFDEFKVMML 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00799 141 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Mepo3g00799 141 Pfam EF-hand domain pair 78 140 IPR002048 GO:0005509
Mepo3g00799 141 Pfam EF-hand domain pair 7 68 IPR002048 GO:0005509
Mepo3g00799 141 Gene3D - 1 72 - -
Mepo3g00799 141 PANTHER CALCIUM BINDING PROTEIN 74 140 - -
Mepo3g00799 141 SUPERFAMILY EF-hand 5 141 IPR011992 -
Mepo3g00799 141 FunFam Calmodulin-2 A 71 141 - -
Mepo3g00799 141 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Mepo3g00799 141 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Mepo3g00799 141 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Mepo3g00799 141 FunFam Putative calcium-binding protein CML19 2 70 - -
Mepo3g00799 141 ProSiteProfiles EF-hand calcium-binding domain profile. 111 141 IPR002048 GO:0005509
Mepo3g00799 141 SMART efh_1 79 107 IPR002048 GO:0005509
Mepo3g00799 141 SMART efh_1 43 71 IPR002048 GO:0005509
Mepo3g00799 141 SMART efh_1 6 34 IPR002048 GO:0005509
Mepo3g00799 141 SMART efh_1 115 141 IPR002048 GO:0005509
Mepo3g00799 141 Gene3D - 73 141 - -
Mepo3g00799 141 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Mepo3g00799 141 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00799 Mepo-Chr3 11251229 11251846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00799 3 140 EF-hand Containing Proteins AT1G76650 51.449 1.67e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00799 K13448 - gmx:100784553 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g00799 3 11251229 11251846 Mepo3g00799 3 11251229 11251846 ECH
Mepo3g00799 3 11251229 11251846 Mepo5g03240 5 39521573 39522205 PCT