Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01682 ATGATGAAGTTATATCAATTTGAATTGCTTTTATTCCTTCTCCTTATCATTGACAATACAACCCTTTCACAAAGATTTTCTCCTAAAATAGTCTCTTCTATTCTCAAACCAATATTGAAGGAGGCTAGACAACAAGCTACTGAGTATGCATTGAAGAAGTCATTGGACAAGATCACCCAATCTCCTACTCCAGAGCAACAAGCCGAAGTGATTCAAGGCCTATATCAAATCAAACAATATTTGTACAATTTCGGCTACCTCCAACAATATGGGCCATTCAATGATGTTCTAGACCAACAAACAATCTCAGCCATTAAGATCTACCAACAAAATTTCAATCTCCAAGTTACTGATGGCTACCTAAACACCGAGACTTCACAACAAATCTTGTTACCGCGATGTGGTGTTCCTGATATGAATTTCGAGTACAGCTTCACCAATGATATGTCCTTTTCAAAAGGAAACAAGTGGTTTCGTAAGGAAAAAGAATATCTTACCTATGCTTTTGCTCTGGAGAGCCAAATCCCATTCGACATGACCAAAATGTTTAGAAATGCCTTCGCACGATGGTCGGAAACCACTAGGGTCCTAAATTTTAGCGAGACAACATCATACGATGATGCTGACATTAAGATTGGATTCTACAATATTAATTACATCGATGGGGTTGATGATGTTGTGGTGGGTGACACAGTTATCAAACTTGGTTCGAATGTGAATTCAGGTTTGATACGCCTGATTGCTTCAAAGTACTGGGTGTTGCCAACTGACAACTACATGTGGTCATGGCAGAACGGAGAATTTGATTTGGAGACGGCGGCGATGCATCAGATAGGTCATCTTCTAGGACTTGATCACTCTTTTGATAAGGAGTCTATTATGTATCCAGCCATATTGCCATTACAACAAAGGAAGCTGCAGATAACAGATTCAGATAACCAAGCCATACAACAAATCTATTCCAATGCGGACTCTGACAATGGTGGGTGCTTCACAATGTTTGGATCCAGTTCTGGTCTCCTTACCTCTTTGTTCCTTGGATTTGCTTTTGTGGCTCTCTTGAACTAG 1068 0.3979 MMKLYQFELLLFLLLIIDNTTLSQRFSPKIVSSILKPILKEARQQATEYALKKSLDKITQSPTPEQQAEVIQGLYQIKQYLYNFGYLQQYGPFNDVLDQQTISAIKIYQQNFNLQVTDGYLNTETSQQILLPRCGVPDMNFEYSFTNDMSFSKGNKWFRKEKEYLTYAFALESQIPFDMTKMFRNAFARWSETTRVLNFSETTSYDDADIKIGFYNINYIDGVDDVVVGDTVIKLGSNVNSGLIRLIASKYWVLPTDNYMWSWQNGEFDLETAAMHQIGHLLGLDHSFDKESIMYPAILPLQQRKLQITDSDNQAIQQIYSNADSDNGGCFTMFGSSSGLLTSLFLGFAFVALLN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01682 355 Gene3D Collagenase (Catalytic Domain) 63 326 IPR024079 GO:0008237
Mepo5g01682 355 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 173 320 - -
Mepo5g01682 355 PRINTS Matrixin signature 308 321 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo5g01682 355 PRINTS Matrixin signature 183 198 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo5g01682 355 PRINTS Matrixin signature 273 298 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo5g01682 355 PRINTS Matrixin signature 129 142 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo5g01682 355 SMART col_5 153 322 IPR006026 GO:0006508|GO:0008237|GO:0008270
Mepo5g01682 355 Pfam Matrixin 161 320 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Mepo5g01682 355 Pfam Putative peptidoglycan binding domain 74 128 IPR002477 -
Mepo5g01682 355 PANTHER MATRIX METALLOPROTEINASE 59 321 - -
Mepo5g01682 355 FunFam Metalloendoproteinase 5-MMP 65 324 - -
Mepo5g01682 355 SUPERFAMILY PGBD-like 72 139 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01682 Mepo-Chr5 17993098 17994165 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01682 - - mtr:11411133 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01682 5 17993098 17994165 Mepo1g02722 1 28730798 28732005 PCT