Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02722 ATGAAAAAACAACAGCTTATCCTCCCTTTCACAGTTTCATTCTCTCTCACTCTCCTCATTGTTTCTGCTCGTCTATTTCCCGACGTCCCCTCTTGGATACCTCCCGGCACTCCCCGGGTCGGCCCGTGGGATGCCTTTCGCAATTTCACCGGCTGCCGTCAAGGCGAAAACTACAACGGCCTCTCTAATTTAAAGAACTATTTCCAACACTTCGGTTACATTCCCCGCTCGCCACAATCAAATTTCTCCGATGACTTCGACGATGATCTTCAAGAAGCAATTAAAACCTACCAGAAGAATTTTAATCTCAATGTAACCGGTCAGCTCGACGACATGACTCTCCGGCAGGTCATGCTACCGCGTTGCGGCGTAGCGGATATCATTAACGGTACAACTACCATGAACGCCGGCAAGAACACAGAAACAACGTCAAACAGTGACAGCAAGCTCCGGTTCCATACAGTATCACACTTCACCGTCTTTCCCGGTCAACCACGGTGGCCGGAGGGAAAGCAGGAGCTAACCTACGCGTTCTTCCCCGGTAACGAACTTACAGAAACCGTGAAAAGCGTCTTCGCAACAGCGTTTGCACGGTGGTCGGAGGTCACCACGCTGAAATTCACCGAAACAACGTTATATTCAGGCGCTGATATTAAGATCGGATTCTTCAACGGTGACCATGGAGACGGCGAACCGTTTGACGGAAGCTTAGGAACGCTGGCGCATGCTTTCTCTCCAAGGAACGGGAGGTTTCACCTTGACGCCGCCGAAGACTGGGTAGTTTCCGGCGATGTGTCGAAGTCCACGTTACCAACTGCGGTTGATTTAGAATCAGTGGCGGTGCATGAGATTGGGCACTTGTTAGGATTAGGTCACTCGTCGATGGAGGAAGCGATAATGTTTCCGACGATATCATCAAGGATGAAGAAAGTAGCGCTGGCTGAAGATGATGTAAGGGGAATTCAATATTTATATGGTAGTAACCCTAGTTTCAATGGCTCCACCATCACGTCGTCACCGGAGAGGAATACCGGCAACGGTGGTTGCAGCCTCACTTCTTTGTGGTCCCCGTGGAGACTTTTCTCTCTGTTGACTTTTTTATTCTTTCATTTCTTATTATAG 1122 0.492 MKKQQLILPFTVSFSLTLLIVSARLFPDVPSWIPPGTPRVGPWDAFRNFTGCRQGENYNGLSNLKNYFQHFGYIPRSPQSNFSDDFDDDLQEAIKTYQKNFNLNVTGQLDDMTLRQVMLPRCGVADIINGTTTMNAGKNTETTSNSDSKLRFHTVSHFTVFPGQPRWPEGKQELTYAFFPGNELTETVKSVFATAFARWSEVTTLKFTETTLYSGADIKIGFFNGDHGDGEPFDGSLGTLAHAFSPRNGRFHLDAAEDWVVSGDVSKSTLPTAVDLESVAVHEIGHLLGLGHSSMEEAIMFPTISSRMKKVALAEDDVRGIQYLYGSNPSFNGSTITSSPERNTGNGGCSLTSLWSPWRLFSLLTFLFFHFLL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02722 373 Pfam Putative peptidoglycan binding domain 59 116 IPR002477 -
Mepo1g02722 373 PRINTS Matrixin signature 117 130 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo1g02722 373 PRINTS Matrixin signature 313 326 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo1g02722 373 PRINTS Matrixin signature 216 244 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo1g02722 373 PRINTS Matrixin signature 192 207 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo1g02722 373 PRINTS Matrixin signature 279 304 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo1g02722 373 CDD ZnMc_MMP 166 326 IPR033739 GO:0008237|GO:0008270
Mepo1g02722 373 FunFam Metalloendoproteinase 1 51 331 - -
Mepo1g02722 373 Gene3D Collagenase (Catalytic Domain) 49 331 IPR024079 GO:0008237
Mepo1g02722 373 Pfam Matrixin 170 326 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Mepo1g02722 373 PANTHER MATRIX METALLOPROTEINASE 41 336 - -
Mepo1g02722 373 SMART col_5 163 327 IPR006026 GO:0006508|GO:0008237|GO:0008270
Mepo1g02722 373 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 161 330 - -
Mepo1g02722 373 SUPERFAMILY PGBD-like 64 127 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02722 Mepo-Chr1 28730798 28732005 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02722 - - aprc:113858627 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02722 1 28730798 28732005 Mepo1g02722 1 28730798 28732005 ECH
Mepo5g01682 5 17993098 17994165 Mepo1g02722 1 28730798 28732005 PCT