Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00544 ATGGCTGTTCAAGCTCAATACCCTTCCAATGTACTCTTTCTCAACAACAAAAACGCCCAAGAACAAGAACAAGGACATGATCAATATTCATTGCAACCACAACCTGCTGCTGATCAATCCAATATAATGTTATTCAACACTACAGGTACTAATTCTCGAAAGAGAGGAAGAGGAAGAGAAACAGGAGGAGCTATGATGAATCAATTCTCTTTACAATCTCACACTCCTCATCTTATTGACCTCACTCAACTCCAACAACAGAATCAAAACATTGTTTCTACAGGTTTAGGTTTATCCTTTGGTGATCAAAGACTACAATTGCTACAACAACAACATGGGTGTCATTCCTCTCATTTCTTATCTCTATTGTCAAATGGTTTAGCTTCACAAATCAAACAACAAAAAGATGAAATAGACCAATTCCTTCAAGCCCAGGGAGAAGAGTTACAACGGACAATAGAAGAAAAGAGACAGAGAAACTATCGGGCTATAATAAAGACAGCAGAGGAAACGGTGGCGCGTCGATTAAGAGAAAAGGAAATAGATTTACAAAAAGCCACGCGCAGGAACGCCGAGTTAGAAGCACGCGCGGCGCATCTTAGAACCGAGGCCCAACTTTGGCAAGCTAAAGCGAAAGAACAAGAAGCAACAGCTATTTCTCTTCAAACACAGCTGCATCATGCTATGATGAACGGTGGCGCAGAAAACAGAGGTGAAAATGAATGTGGTCTATCATGCGCCTTAGGTGTTGAGGGTCACGCTGAGGATGCGGAGTCGGGTTATATTGACCCGGAGAGAGTTGTTGGATCGGGTCCTAAATGTAGAGGGTGTGGAAAACGGGTTGCTTCGGTTGTTGTGTTACCGTGTCGACATTTATGTGTTTGTACTGAATGTGACACACGTTTCGGTGTTTGCCCCGTTTGTTTCACTGTTAAAAATTCAACCGTTGAGGTTTATTTATCTTAG 966 0.4213 MAVQAQYPSNVLFLNNKNAQEQEQGHDQYSLQPQPAADQSNIMLFNTTGTNSRKRGRGRETGGAMMNQFSLQSHTPHLIDLTQLQQQNQNIVSTGLGLSFGDQRLQLLQQQHGCHSSHFLSLLSNGLASQIKQQKDEIDQFLQAQGEELQRTIEEKRQRNYRAIIKTAEETVARRLREKEIDLQKATRRNAELEARAAHLRTEAQLWQAKAKEQEATAISLQTQLHHAMMNGGAENRGENECGLSCALGVEGHAEDAESGYIDPERVVGSGPKCRGCGKRVASVVVLPCRHLCVCTECDTRFGVCPVCFTVKNSTVEVYLS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00544 321 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 256 320 - -
Mepo5g00544 321 Coils Coil 176 217 - -
Mepo5g00544 321 CDD mRING-HC-C3HC5_CGRF1-like 272 308 - -
Mepo5g00544 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 321 IPR013083 -
Mepo5g00544 321 ProSiteProfiles Zinc finger RING-type profile. 274 308 IPR001841 -
Mepo5g00544 321 PIRSF SBP1_RNase_bind 1 321 IPR017066 -
Mepo5g00544 321 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 36 318 IPR017066 -
Mepo5g00544 321 Pfam Zinc finger, C3HC4 type (RING finger) 273 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00544 Mepo-Chr5 4777636 4779835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00544 274 310 Miscellaneous Gene Families AT2G21380 37.838 9.63e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00544 K19042 - gmx:100779548 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00544 5 4777636 4779835 Mepo5g00544 5 4777636 4779835 ECH
Mepo5g00544 5 4777636 4779835 Mepo1g01697 1 16742053 16744299 PCT