Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04271 ATGGGAAATTCTTTCGGATGTTCTGCCTCCGGCGAGAGACTGGTATCGGCGGCGAGAGACGGTGACCTTGTGGAGGCGAAGATGCTTTTGAATTGTAATCCCTATCTTGCTAAATACTCCACTTTTGGTGGTCTTAATTCTCCTCTTCATTTTGCATCTGCAAAGGGTCATAACGAGATTGTTGCATTGTTGCTTGAGAATGGAGCTGATGTTAATTCAAGAAATTATTCTGGCCAGACGGCATTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAAACACTTTTACTCTTCAGATGCAATGTTATGAGAGCTGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCAATGAACGGGCATGTAAGATGTATTAGACTTGTTGTGGCTGACTTTGTTCCGAGTGCTCCTTATGATGTGATACATGCTCAATCAGATGCCGAACAAGGTGGTGGATCAAATGTAAAAGGCAAACATGAACAAAGTGCCCTGTCCAAGTTTGTTAATAAGACAGCTGATGGTGGTATCACTGCACTTCATATGGCTTCATTAAATGGGTACTTTGATTGTGTGCAACTGCTACTTGATCTTAATGCAAATATGTCTTCTGTGACATTTCATTATGGAACCTCAATGGATTTAATAGGGGCTGGAAGCACTCCTTTGCATTATGCTGCTTGTGGGGGAAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCAGATCGGATGACTTTGAATTGCAACGGGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACCGTTGCTGGCACCCAGTTCTGATGCCGTAACACCTTCCTTCCCTCATTCAAATTACCTGTCCTTGCCTCTCATGAGTGTTCTCAACATAGCCAGAGAGTATGGATTGCGATCATCTACAACTTCCTCTGATGAGATTGAGTTTTGTGCTGTATGCCTCGAGAGGCCATGTTCAGTGGCTGCAGAAGGTTGTGGACATGAACTTTGTGTGAGATGTGCGCTCTATCTTTGCTCGACAAGCAACGTTTCTTCTGAAATGCTTGGACCTCCTGGTTCTATCCCTTGCCCTCTTTGTAGACATGGAATTGTCTCTTTTGTTAAGTTGCCAGGTTCCCAAGCAAAAGAAAATAAACTACATGTGTCTCTTGGCCTCTGCACTCCATGCATGTTACATCCACGCGACGTAGATCAGCCGTCCCTTTCTCACACACCAGAGATCCAAAGAAACTGCGTTAATTCTGTTCCTTCAGAGTTACTCTGTCCCGTTACATGTAGTCCATTTCCATCTATGGCAATACCTTTATGCACCTGCAATGAAGGTTCATGTCCATCATTTGAACCACGAGACGTAGAAACAAGAAACGAATCACCTCGTCACTCACAGACATCAACAACGGATCAGGATAAAATTGAAGGGCCGAAACTGGATAAAACAACTTGCTCGAACATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCGGAAATAAATGCTTGA 1539 0.4405 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPYLAKYSTFGGLNSPLHFASAKGHNEIVALLLENGADVNSRNYSGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAMNGHVRCIRLVVADFVPSAPYDVIHAQSDAEQGGGSNVKGKHEQSALSKFVNKTADGGITALHMASLNGYFDCVQLLLDLNANMSSVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGADRMTLNCNGWLPLDIARMWGRHWLEPLLAPSSDAVTPSFPHSNYLSLPLMSVLNIAREYGLRSSTTSSDEIEFCAVCLERPCSVAAEGCGHELCVRCALYLCSTSNVSSEMLGPPGSIPCPLCRHGIVSFVKLPGSQAKENKLHVSLGLCTPCMLHPRDVDQPSLSHTPEIQRNCVNSVPSELLCPVTCSPFPSMAIPLCTCNEGSCPSFEPRDVETRNESPRHSQTSTTDQDKIEGPKLDKTTCSNMFWGRRSCSREHQCNSEINA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04271 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 392 IPR013083 -
Mepo4g04271 512 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 112 303 - -
Mepo4g04271 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Mepo4g04271 512 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Mepo4g04271 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Mepo4g04271 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Mepo4g04271 512 SMART ANK_2a 111 142 IPR002110 GO:0005515
Mepo4g04271 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Mepo4g04271 512 SMART ANK_2a 220 252 IPR002110 GO:0005515
Mepo4g04271 512 Pfam Ankyrin repeats (many copies) 220 261 IPR002110 GO:0005515
Mepo4g04271 512 Gene3D - 4 151 IPR036770 -
Mepo4g04271 512 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515
Mepo4g04271 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Mepo4g04271 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Mepo4g04271 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Mepo4g04271 512 SUPERFAMILY RING/U-box 315 375 - -
Mepo4g04271 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Mepo4g04271 512 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Mepo4g04271 512 Gene3D - 154 283 IPR036770 -
Mepo4g04271 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Mepo4g04271 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Mepo4g04271 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Mepo4g04271 512 MobiDBLite consensus disorder prediction 458 485 - -
Mepo4g04271 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 205 - -
Mepo4g04271 512 Pfam Ankyrin repeat 178 205 IPR002110 GO:0005515
Mepo4g04271 512 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Mepo4g04271 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Mepo4g04271 512 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04271 Mepo-Chr4 52480654 52484419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04271 46 292 Miscellaneous Gene Families AT1G07710 26.236 9.33e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04271 K19044 - gmx:100793886 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04271 4 52480654 52484419 Mepo4g04271 4 52480654 52484419 ECH
Mepo7g01225 7 19773293 19779648 Mepo4g04271 4 52480654 52484419 PCT