Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03558 ATGAAGAAACTTTTATCTCTAGTGGATGTGTTTTTGGTACTTGCATTGATCTGTTGCAACTCATGGACAGTTTGGAGCAGCTCAAGCTGCAAACCGATAAACATTAAGGAAGTTCGACCACACAGTGTCAGTATTACTGAATTTGGAGCAGTGGGAGATGGGATCACTCTCAATACAAAGGCATTTCAGAATGCTATTTTCTATCTAAATTCATATGCCGACAAAGGTGGAGCCAGGCTTTTTGTCCCTGTTGGCCGGTGGTTAACTGGTAGTTTTGATCTCATTAGCCATCTCACTTTGTGGTTGGACAAAGGTGCAATAATTCTTGGATCAACGAACTCTGAAGATTGGCCGGTTGTGGATGCTCTACCATCATATGGTAGGGGAAGGGAGTTACCGGGTGGACGGCATAGAAGCCTTATTTATGGGCACAATTTAACTGATGTCATCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATTTGGTGGAGTAAATTTCGTAACAAAACACTCGACCATACACGCCCCCATTTAGTCGAATTGATGAATTCAACAGATGTTCTTATTTCAAATGTAACCTTCTTGGATTCACCATTTTGGACTATCCATCCTGTATATTGCAGCCATGTCACAATTCAAAATGTCACAATCCTTGCTCCTTTTGGTTCACCAAACACAGATGGGATTGATCCAGATTCTTCTGATAATGTATGCATTGAAGATTGTTATATGAGCACCGGTGATGATCTAATTTCCATTAAGAGTGGATGGGATGAATATGGAATTTCATTTGGTCGACCAAGTACAAACATTAACATCCATAGGCTCACCGGGAGAACAACGAGTGCCGGAATCGCTATCGGAAGTGAGATGTCTGGAGGTGTTTCAGAAGTTCATGCAGAAGATATTTACATTTTTGATTCAAAAAGTGCAATTAGAATAAAAACTTCTCCTGGCAGGGGTGGTTATGTTAAAAATGTCCATATCTCTAACATGACTTTGGTTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAGCATCCAGATGACTCATATGACCCAGATGCTCTACCTGTGATAGAAAGGATTACTGTCGAGAATGTTATAGGGGAAAACATCAAACGCGCGGGCCTGATACAAGGTATTAAAGGTGACAACTTTGTCGATATCTGTTTATCAAACATCACTCTTAATGTGAGCAAAAAAAATCCATGGAACTGCTCGGACGTTAAAGGATACTCTGAATTGGTTTCTCCTAAAGTTTGTGAGCAACTTAGTGAGAGAATATTTCCTGATCATTTTTCAAACTGTTACAAGTTACCAGATATCATAAAGAGTTCGAGTAGTCGAAACAAGGTTGCTTGGTTGCAGTCTTGGTAG 1398 0.3991 MKKLLSLVDVFLVLALICCNSWTVWSSSSCKPINIKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSYADKGGARLFVPVGRWLTGSFDLISHLTLWLDKGAIILGSTNSEDWPVVDALPSYGRGRELPGGRHRSLIYGHNLTDVIITGNNGTIDGQGSIWWSKFRNKTLDHTRPHLVELMNSTDVLISNVTFLDSPFWTIHPVYCSHVTIQNVTILAPFGSPNTDGIDPDSSDNVCIEDCYMSTGDDLISIKSGWDEYGISFGRPSTNINIHRLTGRTTSAGIAIGSEMSGGVSEVHAEDIYIFDSKSAIRIKTSPGRGGYVKNVHISNMTLVNVDIAIRFTGLYGEHPDDSYDPDALPVIERITVENVIGENIKRAGLIQGIKGDNFVDICLSNITLNVSKKNPWNCSDVKGYSELVSPKVCEQLSERIFPDHFSNCYKLPDIIKSSSSRNKVAWLQSW 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03558 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Mepo4g03558 465 SUPERFAMILY Pectin lyase-like 37 430 IPR011050 -
Mepo4g03558 465 Gene3D - 23 424 IPR012334 -
Mepo4g03558 465 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Mepo4g03558 465 PANTHER PECTIN LYASE-RELATED 19 439 - -
Mepo4g03558 465 SMART pbh1 237 269 IPR006626 -
Mepo4g03558 465 SMART pbh1 210 236 IPR006626 -
Mepo4g03558 465 SMART pbh1 271 292 IPR006626 -
Mepo4g03558 465 SMART pbh1 327 348 IPR006626 -
Mepo4g03558 465 SMART pbh1 298 319 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03558 Mepo-Chr4 45000650 45004091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03558 1 465 Glycoside Hydrolase AT3G62110 67.230 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03558 - - lja:Lj0g3v0276749.1 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03558 4 45000650 45004091 Mepo4g03558 4 45000650 45004091 ECH
Mepo3g03847 3 47947589 47948832 Mepo4g03558 4 45000650 45004091 PCT