Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01697 ATGACTATCACCACCACTCCTCCGTTAGATCAACAGAATCTTGAAGAGGATACTGAGATGCTTGTTCCTAACTCTGATGCTGTTGTTGTTGAAGGTCCTCAACCTATGGAAGTAGTTCAAGCAGAAAACACAAGTACAGTGGATGCTGTGGCAGTTGAAGATCCGCCAATTGGGAGATTCACGTGGACTATTGACAATTTTTCGAGGCTTCCGAAGAAACATTATTCCGATGTTTTCACTGTTGGTGGCTATAAATGGCGGATACTGATCTTTCCGAAGGGGAACAATGCTGAACATCTGTCAATGTATATAGATGTTGCAGATGCAGGGTCGATGCCTTATGGTTGGACTAGATTTGCACAGTTCAGCTTAACTGTGGTCAATCAGGTTCACAGTAAATATTCCGTCAGAAAAGAAACACAGCACCAGTTTAATGCACGTGAGAGTGATTGGGGTTTCACTAATTTCATGCCTCTTGCTGAATTGTATGATCCTAGTAGAGGCTATGTTGTGGAAGACAGATGCATACTTGAGGCTGATGTGAATGTGCGCAAAGATCTTGATTACTGGGCACATGACTCAAAAAAAGAAACTGGTTGTGTCGGTTTGAAAAACCAAGGAGCTACTTGTTACATGAATTCTCTTCTTCAGACACTGTATCACATTCCTTATTTCAGAAAGGCTGTGTACCATATGCCCACGACTGAAAATGATATGCCATCTGGGAGCATCCCTCTGGCATTACAGAGTTTGTTTTACAAGTTGCAGTATAATGACAGCAGTGTATCAACAAAAGAGTTAACCAAATCTTTTGGATGGGATACTTATGATTCATTCATGCAGCATGATGTCCAAGAACTTAACAGGGTTCTCTGTGAAAAGCTAGAAGACAAAATGAAGGGAACTGTTGTGGAAGGCACTATACAGAAGTTGTTTGAAGGCCACCATATGAACTATATTGAATGCATGAATGTGGATTATAAATCAACAAGAAAAGAATCATTTTATGATCTTCAGCTTGATGTCAAAGGCTGTACAGATGTGTATGCTTCTTTTGATAAGTATGTGGAAGTAGAACAGCTTGAGGGTGATAACAAGTATCATGCAGAGCAGTATGGTTTACAGGAAGCAAGAAAGGGTGTATTGTTCATTGATTTTCCACCTGTTCTTCAGCTTCAGTTAAAACGGTTTGAGTATGATTTTGCGCGAGACACTATGGTAAAGATCAATGACCGCTATGAGTTCCCCTTACAATTAGATCTTGATAGGGATAATGGGAAGTATCTATCTCCTGACGCAGACAGAAGTATTCGCAACCTTTATACACTTCACAGTGTTTTGGTTCACAGCGGTGGAGTTCATGGTGGACACTACTATGCTTATATACGCCCGACTCTTTCAAATCAGTGGTTTAAATTCGATGATGAACGGGTAACAAAAGAAGATACAAACAGGGCTTTAGAAGAGCAGTATGGTGGTGAAGAAGAGTTACCTCTTACAAATCCTGGGTTCAACAACTCTCCTTTTAAATTTACAAAGTACTCAAATGCTTACATGCTTGTCTATGTTCGTGAAAGTGACAAGGATAAGATAATTTGTAATGTGGATGAGAAGGACATTGCCAGGCACCTTCAAATAAGGTTAAAGAAAGAACAAGAGGAAAAAGAGAAGAAGAAGAAGGAAAAGGCTGAGGCTCATTTGTACACCATTGTAAAGATTGCCCGTGATGATGATCTGCACGAGCAAATCGGAAAGGATATATTCTTTGATCTTGTGGATCATGATAAAGTGCGAAGTTTTCGCATTCAAAAACAGATGCCATTTACCATTTTCAAGGAAGAAGTTGCGAAAGAGTTTGGCATACCAGTTGAGTACCAACGTTTTTGGATGTGGGCAAAGCGCCAAAACCATACATTTCGGCCAAGTAGACCGGTGACAGCTCAGGAGGAAGCACAGGCAGTTGGACAGTTAAGGGAAGTTTCCAATAAGGCAAATAATGGAGAGTTAAAGTTATTTTTGGAAATAGAAATGGGGCAGGATTTGCGTCCTATTCCTCCTCCTGAGAAGCTGAAAGAGGAGTTGCTGCTATTCTTTAAACTTTATGAACCTTCAAGTCAGAAGCTTAGGTATGTTGGGAGGCTTTTCGTGGTGGGTAGCAGAAAGCCAGTAGATATATTGAAGAAACTAAATGAAATGGCTGGATTTGATCCGGATGAAGAAATTGATCTGTTTGAGGAAATAAAATTTGATCCCAAAATCATGTGCGAACATGTTGACCAGAAGTCCACTTTTCGTGACAATCAGCTAGAGGATGGTGATATTATTTGCTTTCAGAAGTCCCCTCCAGCTGGCGATGGACAGCAGCAATATTGCTATCCAGATGTTCCTTCATTCTTTGAATATGTGCAAAACCGTCAAGTTGTTCGCTTTAGGTTTTTGGAGAAACCCAAGGAAGATGAGTTCAGTCTTGAGCTGTCAAAGCTTCACACTTATGATGATGTTGTAGAAAGAGTCTCCCAACATCTTGGTTTAAATGATCCTTCTAAAATCAGACTTACATCTCATAACTGCTACTCCCAGCAACCTAAACCACAGCCTATCAAGTACCGAGGAGTGGATCAATTGTCTGACATGCTGGTTCACTACAATCAGGCTTCTGATATTCTATACTATGAAGTACTGGATATTCCTCTTCCGGAATTGCAAAACCTAAAAACGCTCAAGATTGCTTTCCATCATGATGCCAAGGATGAAGTGATGATAATTAGATTACAGAAGCACAGTACTGTAGCAGATGTAATTAATGATCTAAAATCAAAGGTAGATTTATCACATCCTGATGCGGAACTTAGATTGGTTGAAGTATTTAATCACAAGATCTATAAGATTTTTCATGTCAATGAGAAGATTGAGAATATTAATGATCATTATTGGACATTACGAGCAGAGGAGATCCCGGAAGAAGAGAAAAGCCTTGGCCCTCATGATCGGATGATACATGTTTATCATTTTTTGAAAGATACTGCTCAAAATCAGATGCATGTTCAGAACTTTGGAGACCCTTTCTTCTTGGTTATCCGTGAGGGTGAGACTTTAGCTGATGTCAAATTGCGGGTACAAAAGAAGTTGCAAGTTCCAAATGAGGAGTTTTTGAAGTGGAAGTTTGCGTTTGTCTCACTTGGACGTCCTGAGTACCTTCAAGATTCAGATATTATTTCCAGTCGGTTTCAGAGAAGGGACATATACGGCGCATGGGAGCAATATCTTGGACTGGAGCACACTGACAATTCACCAAAAAGATCATATACAGCCAATCAGAATCGTCATGCGTTTGATAAACCAATAAAAATCTACAACTAG 3360 0.4 MTITTTPPLDQQNLEEDTEMLVPNSDAVVVEGPQPMEVVQAENTSTVDAVAVEDPPIGRFTWTIDNFSRLPKKHYSDVFTVGGYKWRILIFPKGNNAEHLSMYIDVADAGSMPYGWTRFAQFSLTVVNQVHSKYSVRKETQHQFNARESDWGFTNFMPLAELYDPSRGYVVEDRCILEADVNVRKDLDYWAHDSKKETGCVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYNDSSVSTKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECMNVDYKSTRKESFYDLQLDVKGCTDVYASFDKYVEVEQLEGDNKYHAEQYGLQEARKGVLFIDFPPVLQLQLKRFEYDFARDTMVKINDRYEFPLQLDLDRDNGKYLSPDADRSIRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSNQWFKFDDERVTKEDTNRALEEQYGGEEELPLTNPGFNNSPFKFTKYSNAYMLVYVRESDKDKIICNVDEKDIARHLQIRLKKEQEEKEKKKKEKAEAHLYTIVKIARDDDLHEQIGKDIFFDLVDHDKVRSFRIQKQMPFTIFKEEVAKEFGIPVEYQRFWMWAKRQNHTFRPSRPVTAQEEAQAVGQLREVSNKANNGELKLFLEIEMGQDLRPIPPPEKLKEELLLFFKLYEPSSQKLRYVGRLFVVGSRKPVDILKKLNEMAGFDPDEEIDLFEEIKFDPKIMCEHVDQKSTFRDNQLEDGDIICFQKSPPAGDGQQQYCYPDVPSFFEYVQNRQVVRFRFLEKPKEDEFSLELSKLHTYDDVVERVSQHLGLNDPSKIRLTSHNCYSQQPKPQPIKYRGVDQLSDMLVHYNQASDILYYEVLDIPLPELQNLKTLKIAFHHDAKDEVMIIRLQKHSTVADVINDLKSKVDLSHPDAELRLVEVFNHKIYKIFHVNEKIENINDHYWTLRAEEIPEEEKSLGPHDRMIHVYHFLKDTAQNQMHVQNFGDPFFLVIREGETLADVKLRVQKKLQVPNEEFLKWKFAFVSLGRPEYLQDSDIISSRFQRRDIYGAWEQYLGLEHTDNSPKRSYTANQNRHAFDKPIKIYN 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01697 1119 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 202 217 IPR018200 GO:0004843|GO:0006511
Mepo4g01697 1119 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 60 528 - -
Mepo4g01697 1119 Pfam Ubiquitin-specific protease C-terminal 889 1098 IPR029346 -
Mepo4g01697 1119 Gene3D - 805 902 - -
Mepo4g01697 1119 Coils Coil 541 566 - -
Mepo4g01697 1119 ProSiteProfiles MATH/TRAF domain profile. 57 181 IPR002083 GO:0005515
Mepo4g01697 1119 CDD MATH 58 181 IPR002083 GO:0005515
Mepo4g01697 1119 Gene3D Cysteine proteinases 197 526 - -
Mepo4g01697 1119 CDD peptidase_C19C 199 527 - -
Mepo4g01697 1119 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 57 196 IPR008974 GO:0005515
Mepo4g01697 1119 FunFam Ubiquitin carboxyl-terminal hydrolase 13 686 804 - -
Mepo4g01697 1119 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 441 458 IPR018200 GO:0004843|GO:0006511
Mepo4g01697 1119 SMART math_3 59 162 IPR002083 GO:0005515
Mepo4g01697 1119 FunFam Ubiquitin carboxyl-terminal hydrolase 13 55 197 - -
Mepo4g01697 1119 Gene3D - 686 804 - -
Mepo4g01697 1119 Pfam Ubiquitin carboxyl-terminal hydrolase 201 522 IPR001394 GO:0004843|GO:0016579
Mepo4g01697 1119 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 626 879 IPR024729 -
Mepo4g01697 1119 SUPERFAMILY TRAF domain-like 58 188 - -
Mepo4g01697 1119 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 201 525 IPR028889 -
Mepo4g01697 1119 FunFam Ubiquitin carboxyl-terminal hydrolase 13 198 526 - -
Mepo4g01697 1119 FunFam Ubiquitin carboxyl-terminal hydrolase 13 805 902 - -
Mepo4g01697 1119 Pfam MATH domain 64 183 IPR002083 GO:0005515
Mepo4g01697 1119 SUPERFAMILY Cysteine proteinases 196 553 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01697 Mepo-Chr4 22230418 22255723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01697 308 480 Miscellaneous Gene Families AT2G24640 28.652 1.13e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01697 K11838 - mnt:21403132 1897.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03639 3 46157279 46162728 Mepo4g01697 4 22230418 22255723 ECH
Mepo4g02179 4 29401129 29403063 Mepo4g01697 4 22230418 22255723 ECH
Mepo4g01697 4 22230418 22255723 Mepo4g01697 4 22230418 22255723 ECH
Mepo3g03639 3 46157279 46162728 Mepo4g01697 4 22230418 22255723 PCT