Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01071 ATGTGTCCCCTAACCCGCAGTGAATTGGAGCTGATTTTTGAGAAGTTAGACATAAATAGTGATGGAATTTTAACCCTTGAAGAGCTGAATCAATTGTTAGTGAGAACAGGTTTCAAGTATAGCATAGAGGAGCTTGAATATCTAGTGGGAAAGAAGAGTCTAAACTTGAGTGAGTTCTTGTGCTTTTATGACTCCATATTGAATCACAAAAATGGTGATGGTGATGAGATTGAGGAGGTAGAATTAGAAAGTGATCTTTTGAAGACTTTCAAGGTGTTTGATTTAGATGGAGATGGATTCATCACTAGTCAAGAGCTGGAATGTGTGTTGAAGAGACTTGGCATGTGGAATGAAGAAAAGGATTGTAGATCAATGATTTATTCATATGACATTAATTTAGATGGCAAGCTTGATTTCAAGGAATTTAAGAATATGATGTTTCTTACACTACAACGGGTTTAG 462 0.3593 MCPLTRSELELIFEKLDINSDGILTLEELNQLLVRTGFKYSIEELEYLVGKKSLNLSEFLCFYDSILNHKNGDGDEIEEVELESDLLKTFKVFDLDGDGFITSQELECVLKRLGMWNEEKDCRSMIYSYDINLDGKLDFKEFKNMMFLTLQRV 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01071 153 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Mepo4g01071 153 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 71 146 - -
Mepo4g01071 153 FunFam Calmodulin 1 5 149 - -
Mepo4g01071 153 ProSiteProfiles EF-hand calcium-binding domain profile. 81 116 IPR002048 GO:0005509
Mepo4g01071 153 SUPERFAMILY EF-hand 7 147 IPR011992 -
Mepo4g01071 153 CDD EFh 85 146 IPR002048 GO:0005509
Mepo4g01071 153 SMART efh_1 121 149 IPR002048 GO:0005509
Mepo4g01071 153 SMART efh_1 8 36 IPR002048 GO:0005509
Mepo4g01071 153 SMART efh_1 85 113 IPR002048 GO:0005509
Mepo4g01071 153 Pfam EF-hand domain pair 85 146 IPR002048 GO:0005509
Mepo4g01071 153 Gene3D - 73 152 - -
Mepo4g01071 153 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Mepo4g01071 153 ProSitePatterns EF-hand calcium-binding domain. 94 106 IPR018247 -
Mepo4g01071 153 Pfam EF hand 12 32 IPR002048 GO:0005509
Mepo4g01071 153 Gene3D - 5 67 - -
Mepo4g01071 153 ProSiteProfiles EF-hand calcium-binding domain profile. 117 152 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01071 Mepo-Chr4 14145547 14146008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01071 4 146 EF-hand Containing Proteins AT1G21550 43.537 1.95e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01071 K13448 - gmx:100779760 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01071 4 14145547 14146008 Mepo4g01071 4 14145547 14146008 ECH
Mepo4g01071 4 14145547 14146008 Mepo3g06429 3 78322931 78323493 PCT