Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06429 ATGTTGTTTGGGAATATGTCTATTCTATCTAGCACTGATTTGCATCGTATTTTTGAGAAGCTAGATACAAATTGTGACGGTTTTGTGAGTCTTGAGGAGCTAAACTCTGTGCTCCAAAGGATATGCAATAATAGCTCACAATTTAGCTTAGAAGAACTTGAATCTCTTGTAGAAAAGAAGAGCTTAGACTTCAATGAATTCTTGTTCTTTTACAACTCTATATCAAAGGAGAAGAATGAAGAGAATAGAGGAGGTGATGAAGATGAGAATGATGAGTTGGAGAGGGATCTTGTGAAGACTTTCAAAGTGTTTGATTTGGATGGAGATGGATTCATCACAAGCCAAGAGCTTGAGTGTGTGTTGAAGAGACTTGGATTCTTGGATGAAAGTAGTGGGAGGGATTGTAGAAGTATGATTAGGTTTTATGATACCAATTTGGATGGTAGGCTTGATTTTCAGGAATTCAAGAACATGATGTTGCTTACAAGTGTATGA 495 0.3677 MLFGNMSILSSTDLHRIFEKLDTNCDGFVSLEELNSVLQRICNNSSQFSLEELESLVEKKSLDFNEFLFFYNSISKEKNEENRGGDEDENDELERDLVKTFKVFDLDGDGFITSQELECVLKRLGFLDESSGRDCRSMIRFYDTNLDGRLDFQEFKNMMLLTSV 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06429 164 SMART efh_1 13 41 IPR002048 GO:0005509
Mepo3g06429 164 SMART efh_1 96 124 IPR002048 GO:0005509
Mepo3g06429 164 SMART efh_1 134 162 IPR002048 GO:0005509
Mepo3g06429 164 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Mepo3g06429 164 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Mepo3g06429 164 ProSitePatterns EF-hand calcium-binding domain. 105 117 IPR018247 -
Mepo3g06429 164 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 61 159 - -
Mepo3g06429 164 Coils Coil 76 96 - -
Mepo3g06429 164 Gene3D - 4 71 - -
Mepo3g06429 164 ProSiteProfiles EF-hand calcium-binding domain profile. 92 127 IPR002048 GO:0005509
Mepo3g06429 164 SUPERFAMILY EF-hand 13 161 IPR011992 -
Mepo3g06429 164 Gene3D - 85 163 - -
Mepo3g06429 164 CDD EFh 96 159 IPR002048 GO:0005509
Mepo3g06429 164 Pfam EF hand 17 37 IPR002048 GO:0005509
Mepo3g06429 164 FunFam Probable calcium-binding protein CML44 71 162 - -
Mepo3g06429 164 ProSiteProfiles EF-hand calcium-binding domain profile. 130 164 IPR002048 GO:0005509
Mepo3g06429 164 Pfam EF-hand domain pair 97 159 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06429 Mepo-Chr3 78322931 78323493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06429 7 160 EF-hand Containing Proteins AT1G21550 43.226 8.39e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06429 K13448 - gmx:100527117 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06429 3 78322931 78323493 Mepo3g06429 3 78322931 78323493 ECH
Mepo4g01071 4 14145547 14146008 Mepo3g06429 3 78322931 78323493 PCT