Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00775 ATGTCTTCTTTCCTTCCTGCCACAACAGAGTCTATTGCTCAGGCATTGGAGGCTAAAGACCCATCTGAGTCTATCTCCATTCTTTATCGTGTACTTGGTGATCCTTCTTCATCCCCTGATGCTCTGCGCATGAAAGAGCAGGCTATCACAAACCTCACCGACCTTCTCAGGCAAGAGAATAGGGCAGAAGATCTGCGCAGCCTTCTCACTCAGTTGAGGCCATTCTTTTCCTTGATTCCAAAGGCAAAAACTGCAAAGATTGTGAGGGGAATAATTGATTCTGTTGCTAAAATACCAGGGACATCCGAGTTACAAATTTCACTATGTAAAGAAATGGTGCAATGGACTCGCGATGAAAAGCGTACCTTTCTGAGGCAGCGAATTGAGGCAAGGCTTGCTACTCTTCTGATGGAAACTAAGGAATATTCACAAGCTTTGACTCTCCTTAGTGGCTTGGTCAAAGAGGTTAGAAGGCTAGATGACAAACTCCTACTTGTAGACATAGACTTGCTTGAAAGCAAGCTACACTTCTCCTTAAAAAATCTTCCCAAAGCAAAAGCTGCCCTCACTGCTGCAAGAACAGCTGCAAATGCTATTTATGTTCCACCAGCTCAACAAGGTGCCATAGATTTGCAGAGTGGGATTCTTCATGCTGAAGAGAAGGATTACAAAACTGCATACAGTTATTTCTTTGAAGCTTTTGAGTCTTTCAATGCTCTTGAAGATCCCAAAGCTGTCTTTAGCCTGAAATACATGTTGCTGTGTAAGATCATGGTTAGTCAAGCTGATGATGTGGCGGGAATCATATCCTCTAAAGCAGGCCTGCAATATCTTGGACCTGATTTGGATGCAATGAAAGCTGTTGCAGATGCTCATTCCAAAAGATCCCTGAAATTGTTTGAAAGTGCTTTACGAGACTTCAAGGCACAGTTGGGGGAAGATCCAATCGTTGATAGGCACTTGACATCCCTGTATGATACTCTTCTGGAGCAGAATCTTTGCAGATTGATCGAACCATTCTCAAGGGTTGAAATTGCACATATTGCTGAACTTATTGAGCTTCCCATTGATCACGTGGAGCGAAAGATGTCTCAGATGATTTTGGACAAGAAATTCGCCGGGACATTGGATCAAGGTGCTGGATGCCTTGTCATTTTTGATGACCCTAAAACTGATGCTATATATCCTGCAACTTTAGAAACCATTTCTAATGTTGGGAAAGTCGTGGACAGTCTTTTTGTTAGGTCTGCCAAGATAATGACATGA 1266 0.4281 MSSFLPATTESIAQALEAKDPSESISILYRVLGDPSSSPDALRMKEQAITNLTDLLRQENRAEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSELQISLCKEMVQWTRDEKRTFLRQRIEARLATLLMETKEYSQALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLKNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYLGPDLDAMKAVADAHSKRSLKLFESALRDFKAQLGEDPIVDRHLTSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKMSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLFVRSAKIMT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00775 421 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 319 402 IPR000717 -
Mepo4g00775 421 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 13 128 IPR040773 -
Mepo4g00775 421 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 40 417 - -
Mepo4g00775 421 SUPERFAMILY TPR-like 127 315 IPR011990 GO:0005515
Mepo4g00775 421 Gene3D - 45 420 - -
Mepo4g00775 421 FunFam 26S proteasome non-ATPase regulatory subunit 11 45 420 - -
Mepo4g00775 421 Pfam PCI domain 284 385 IPR000717 -
Mepo4g00775 421 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 392 417 IPR040780 -
Mepo4g00775 421 SMART PCI/PINT associated module 142 318 - -
Mepo4g00775 421 ProSiteProfiles PCI domain profile. 222 390 IPR000717 -
Mepo4g00775 421 SUPERFAMILY "Winged helix" DNA-binding domain 313 395 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00775 Mepo-Chr4 10190624 10195212 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00775 K03036 - gmx:100796188 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07554 3 88876530 88879968 Mepo4g00775 4 10190624 10195212 PCT