Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07554 ATGTCTACATCTTATCTTCCTGCCACAACGGATTCAATTGCTCAGGCATTGGAGGCTAAAGACCCTTCTGATGCGATCTCCATTCTTTATCGTGTACTTGATGATCCATCTTCTTCACCAGAAGCTCTGCGTATGAAAGAGCAGGCCATCACAAATCTTACTGACCTTCTCAGACAAGAAAACAGGGGAGAGGATCTGCGCGGCCTTCTCACTTCGTTGAGGCCCTTCTTCTCCTTGATTCCCAAGGCAAAAACTGCAAAGATTGTAAGGGGAATAATTGACTCGGTTGCTAAAATACCAGGGACATCTGATCTACAGATTTCGCTGTGTAAAGAAATGGTGCAGTGGACTCGTGCTGAAAAGCGTACTTTTCTGAGGCAACGAATTGAAGCAAGACTTGCAGCGCTTCTGATGGAAACTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGGTTGGTCAAAGAGGTTAGGAGATTAGATGACAAACTTCTTCTTGTAGACATTGACTTGCTAGAAAGCAAACTGCACTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCCCTCACGGCTGCTAGAACAGCTGCAAATGCTATTTATGTGCCTCCTGCTCAACAAGGGGCCATAGATCTTCAGAGTGGAATACTTCATGCTGAGGAGAAGGACTACAAAACTGCATACAGCTATTTCTTTGAAGCCTTTGAGTCTTTCAATGCTCTTGAAGACCCTAAGGCTATTTTCAGCCTGAAATATATGTTGTTGTGTAAGATCATGGTGAATCAAGCTGATGACGTGGGTGGAATTATTTCTTCTAAAGCAGGATTGCAATATGTTGGGCCTGACTTGGATGCGATGAAAGCTGTTGCTGATGCTTATTCTAAGCGATCCCTTAAGTTTTTCGAAACTGCTTTGCAGGACTACAAGGCACAGTTGGGGGAAGACCCAATTGTTCACAGACACATTTCATCCCTGTATGATACCCTTCTGGAGCAGAATCTTTGTAGGTTGATTGAGCCATTCTCAAGAGTTGAGATTGCACATATTGCTGAGCTTATCGAGCTTCCAATTGATCACGTTGAGCGGAAGATGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCCGGATGCCTCGTTATATTCGATGATCCCAAGACTGATGCAATATACCCTGCAACTTTAGAGACCATTTCCAATGTTGGGAAAGTGGTTGACAGTCTTTATGTGAGGTCTGCCAAGATCATGGGATGA 1269 0.4374 MSTSYLPATTDSIAQALEAKDPSDAISILYRVLDDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRGLLTSLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQISLCKEMVQWTRAEKRTFLRQRIEARLAALLMETKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAIFSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAYSKRSLKFFETALQDYKAQLGEDPIVHRHISSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKMSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07554 422 SUPERFAMILY TPR-like 123 317 IPR011990 GO:0005515
Mepo3g07554 422 SMART PCI/PINT associated module 143 319 - -
Mepo3g07554 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 129 IPR040773 -
Mepo3g07554 422 Pfam PCI domain 285 386 IPR000717 -
Mepo3g07554 422 FunFam 26S proteasome non-ATPase regulatory subunit 11 46 421 - -
Mepo3g07554 422 Gene3D - 46 421 - -
Mepo3g07554 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 IPR000717 -
Mepo3g07554 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Mepo3g07554 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 15 418 - -
Mepo3g07554 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Mepo3g07554 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07554 Mepo-Chr3 88876530 88879968 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07554 K03036 - gmx:100780845 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07554 3 88876530 88879968 Mepo4g00775 4 10190624 10195212 PCT