Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00034 ATGTCAGAGTATTTCTGTAGCGACTGCAAACGCGAAACAGAAGTGGTATTCGATCACTCAGCAGGCGACACAGTTTGTTCCGAATGCGGACTCGTTCTTGAATCACGTTCCATTGATGAAACCTCTGAATGGCGCACTTTCGCCAACGAGTCCAACGACAACGATCCCAACCGTGTTGGCAGTGCTTCTAACCCTCTCTTAACTGATGGTGGTCTCTCCACCTACATAGCTAAACCTAACGGCTCTTCCGGCGAGTTTCTTTCTCCGACTCTTAATCGCTTGCAGAATCGTGCCTCTAACCATGATCGTACACTCCTTCTTGCTTTCAAAAATATCACCACTATGGCCGAAAGGTCCCATTGTTTGTATTCTTATGGTTCTTTTGTGGTTGATTTGAAGGATCGAGCAAATGAGATATATAAGAGGGTTGAAGACCAAAAGTCTAGTAGAGGAAGAAATCAAGATGCTTTGTTGGCTGCTTGTATCTACATTGCTTGCCGACAAGAAGAGAAACCACGAACTGTAAAGGAAATTTGTTCTGTTGCCAATGGTGCCACAAAGAAGGAAATTGGCCGAGCAAAAGAGTACATAGTGAAACAACTTGGTTTGGATAATGGCCAGTCAATGGAGATGGGCACAATACATGCTGGAGACTTTATGAGGCGATTCTGTTCCAACCTTGATTTGAACAATCAAGCTATGAAAGCCGCTATGGAAGCAGTGAAGAAATCAGAAGAATTTGATATAAGGAGGAGTCCTATAACAATTGCTGCTGCAGTTATATACATCATAGCTCAGCTTTCTGGTGATAAAAAACCTCTCAAAACTATATCAATTGTCACGGGAGTTGCAGAAGGAACTATTAAAGGCTCCTACAAGGATCTTTATCCCTATATAACAAAAATAATACCAAATTGGTATGCAAAAGAGGAGGATTTGAAGAGCCTTTCTGGCCCTTGA 960 0.424 MSEYFCSDCKRETEVVFDHSAGDTVCSECGLVLESRSIDETSEWRTFANESNDNDPNRVGSASNPLLTDGGLSTYIAKPNGSSGEFLSPTLNRLQNRASNHDRTLLLAFKNITTMAERSHCLYSYGSFVVDLKDRANEIYKRVEDQKSSRGRNQDALLAACIYIACRQEEKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLDNGQSMEMGTIHAGDFMRRFCSNLDLNNQAMKAAMEAVKKSEEFDIRRSPITIAAAVIYIIAQLSGDKKPLKTISIVTGVAEGTIKGSYKDLYPYITKIIPNWYAKEEDLKSLSGP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00034 319 ProSitePatterns Transcription factor TFIIB repeat signature. 151 166 IPR023486 -
Mepo4g00034 319 SMART cyclin_7 110 199 IPR013763 -
Mepo4g00034 319 SMART cyclin_7 218 297 IPR013763 -
Mepo4g00034 319 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Mepo4g00034 319 PRINTS Transcription initiation factor IIB signature 159 178 IPR000812 GO:0006352|GO:0070897
Mepo4g00034 319 PRINTS Transcription initiation factor IIB signature 251 267 IPR000812 GO:0006352|GO:0070897
Mepo4g00034 319 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Mepo4g00034 319 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Mepo4g00034 319 PRINTS Transcription initiation factor IIB signature 186 201 IPR000812 GO:0006352|GO:0070897
Mepo4g00034 319 PRINTS Transcription initiation factor IIB signature 219 237 IPR000812 GO:0006352|GO:0070897
Mepo4g00034 319 PRINTS Transcription initiation factor IIB signature 283 297 IPR000812 GO:0006352|GO:0070897
Mepo4g00034 319 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 5 316 IPR000812 GO:0006352|GO:0070897
Mepo4g00034 319 FunFam transcription initiation factor IIB 91 204 - -
Mepo4g00034 319 Pfam Transcription factor TFIIB repeat 212 296 IPR013150 GO:0017025
Mepo4g00034 319 Pfam Transcription factor TFIIB repeat 132 192 IPR013150 GO:0017025
Mepo4g00034 319 FunFam Transcription initiation factor IIB 5 200 - -
Mepo4g00034 319 Pfam TFIIB zinc-binding 4 47 IPR013137 -
Mepo4g00034 319 SUPERFAMILY Cyclin-like 214 315 IPR036915 -
Mepo4g00034 319 Gene3D - 5 200 - -
Mepo4g00034 319 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Mepo4g00034 319 SUPERFAMILY Cyclin-like 132 203 IPR036915 -
Mepo4g00034 319 FunFam Transcription initiation factor IIB 215 318 - -
Mepo4g00034 319 SUPERFAMILY Zinc beta-ribbon 3 50 - -
Mepo4g00034 319 Gene3D - 215 317 - -
Mepo4g00034 319 CDD CYCLIN_TFIIB_rpt1 108 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00034 Mepo-Chr4 781187 784962 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00034 K03124 - csav:115709913 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00034 4 781187 784962 Mepo4g00034 4 781187 784962 ECH
Mepo3g02838 3 38438488 38442952 Mepo4g00034 4 781187 784962 PCT