Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02838 ATGTCCGATGCGTTTTGCAGCGACTGCAAGCGAGCGACGGAGGTGGTGTTCGACCACTCCGCCGGCGATGCAGTCTGTTCGGAGTGTGGTCTCGTCTTGGAATCTCACTCCATCGATGAAACCTCCGAGTGGCGAACCTTCGCTAACGAATCCGGTGATAACGATCCCGTTCGTGTCGGTGGTCCCAGTAACCCTCTCCTTACCGATGGTGGTCTCTCCACCGTCATTGCTAAGCCTAACGGTGCTTCCGGTGATTTTCTCTCGTCTTCTCTTGGTCGTTGGCAGAATCGCGGTTCTAATCCCGATCGTGGATTGATCCTTGCGTTCAAAACTATTGGTACTATGGCTGAGAGGTTGGGACTGGTTCCGACCATTAAGGACCGAGCTAATGAGATATATAAGCGGGTTGAAGATCAGAAGTCTAGCAGGGGAAGAAATCAGGACGCATTATTGGCTGCTTGCCTCTACATTGCTTGTCGACAAGAAGACAAGCCACGCACCGTAAAGGAAATTTGCTCGATTGCCAATGGAGCCACCAAGAAGGAAATTGGCCGCGCAAAAGAATACATAGTGAAACAACTGGGTTTGGAGAATGGCGGTCAATCTGTTGAAATGGGAACAATTCATGCTGGGGACTTTATGAGACGATTTTGTTCTAATCTTGGCATGAATCATCAAGCTGTTAAAGCTGCTCAGGAATCTGTTCAGAAATCAGAAGAATTTGATATAAGGAGAAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATTACTCAGCTTTCAGATGATAAAAAACCTCTCAAAGATATATCAGTTGCTACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAAGGATCTCTATCCCCATGTTTCAAAGATAATACCAAACTGGTATGCGAAGGAAGAGGATCTGAAGAACCTTTGCAGCCCTTGA 942 0.4671 MSDAFCSDCKRATEVVFDHSAGDAVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPSNPLLTDGGLSTVIAKPNGASGDFLSSSLGRWQNRGSNPDRGLILAFKTIGTMAERLGLVPTIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQLGLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQAVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02838 313 FunFam transcription initiation factor IIB 91 197 - -
Mepo3g02838 313 SUPERFAMILY Cyclin-like 208 309 IPR036915 -
Mepo3g02838 313 CDD CYCLIN_TFIIB_rpt1 108 195 - -
Mepo3g02838 313 ProSitePatterns Transcription factor TFIIB repeat signature. 144 159 IPR023486 -
Mepo3g02838 313 FunFam Transcription initiation factor IIB 209 312 - -
Mepo3g02838 313 Gene3D - 5 193 - -
Mepo3g02838 313 SUPERFAMILY Cyclin-like 105 196 IPR036915 -
Mepo3g02838 313 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Mepo3g02838 313 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Mepo3g02838 313 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 4 310 IPR000812 GO:0006352|GO:0070897
Mepo3g02838 313 FunFam Transcription initiation factor IIB 5 193 - -
Mepo3g02838 313 SMART cyclin_7 110 192 IPR013763 -
Mepo3g02838 313 SMART cyclin_7 212 291 IPR013763 -
Mepo3g02838 313 Gene3D - 209 312 - -
Mepo3g02838 313 PRINTS Transcription initiation factor IIB signature 277 291 IPR000812 GO:0006352|GO:0070897
Mepo3g02838 313 PRINTS Transcription initiation factor IIB signature 179 194 IPR000812 GO:0006352|GO:0070897
Mepo3g02838 313 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Mepo3g02838 313 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Mepo3g02838 313 PRINTS Transcription initiation factor IIB signature 213 231 IPR000812 GO:0006352|GO:0070897
Mepo3g02838 313 PRINTS Transcription initiation factor IIB signature 245 261 IPR000812 GO:0006352|GO:0070897
Mepo3g02838 313 PRINTS Transcription initiation factor IIB signature 152 171 IPR000812 GO:0006352|GO:0070897
Mepo3g02838 313 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Mepo3g02838 313 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Mepo3g02838 313 Pfam Transcription factor TFIIB repeat 103 185 IPR013150 GO:0017025
Mepo3g02838 313 Pfam Transcription factor TFIIB repeat 205 291 IPR013150 GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02838 Mepo-Chr3 38438488 38442952 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02838 K03124 - csav:115709913 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02838 3 38438488 38442952 Mepo3g02838 3 38438488 38442952 ECH
Mepo3g02838 3 38438488 38442952 Mepo4g00034 4 781187 784962 PCT