Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05825 ATGAAGGCAACACTGAGATACTTAGCAGGAATTGCAGGACCTAGTGGTTTTGGCTCAAACTCAACAGCAGAACAAGTTACTCAAAATTGCTCTTCTTTCCTTCCTTCCGGTCTAACCGCTCTAATCACCGGTGGAACTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAGAGAGGAGTGAGAATTGTGATTGGCGCAAGGGACTTGAAGAAGGCAATGAAAGTGAGAGACAATATACAAAAAGAGAGTCCAAATGCTGAGGTTATTCTGTTGGAGATTGATCTTAGCTCTTTTTGTTCTGTACAAAGATTTTGTTCTGATTTTTTAGCTTTAGATCTTCCACTTAATATTCTAATAAACAATGCTGGTATATTCTCTCAAGTTTTGGAGTTCTCTGCAGAGAAAATTGAGATGACATTTGCCACAAATTACTTAGGACATTTTTTGCTAACAGAAATGTTATTGGACAAAATGATAGAAACGTCCAAGAAGACAGATATTCAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAGACATGGTTTTTGTTTCAAAGACATACTCAATGGAAAAAAGTACAGCTATAATGGAACACGTGCTTATGCTCAATCAAAATTGGCCAATATTTTGCATGCCAAAGAAATAGCTAGACAACTCAAGGCAAGGAAAGCAAGAGTAACTATCAATGCAGTTCATCCAGGTATTGTAAAGACAGGAATTATTAAATCTCACAAGGGGTTAATAACAGATTCCTTATTTTTCATAGCATCAAAGTTACTCAAATCGACATCACAGGGTGCAGCAACTACATGTTACGTGGCTTTGAGTCCAAAAACAGAAGGGGTGAGTGGGAAATACTTTACAGATTGTAATGAGAGTAAGTGTTCTCGCTTAGCAAATGATGAATCAAAAGCTCAAAAGTTATGGAACAATACTCATTCCTTGATTCACAAACGACTCCACCAAGCAACAATATGA 999 0.3734 MKATLRYLAGIAGPSGFGSNSTAEQVTQNCSSFLPSGLTALITGGTSGIGAETARVLAKRGVRIVIGARDLKKAMKVRDNIQKESPNAEVILLEIDLSSFCSVQRFCSDFLALDLPLNILINNAGIFSQVLEFSAEKIEMTFATNYLGHFLLTEMLLDKMIETSKKTDIQGRIINVSSVIHSWVKRHGFCFKDILNGKKYSYNGTRAYAQSKLANILHAKEIARQLKARKARVTINAVHPGIVKTGIIKSHKGLITDSLFFIASKLLKSTSQGAATTCYVALSPKTEGVSGKYFTDCNESKCSRLANDESKAQKLWNNTHSLIHKRLHQATI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05825 332 Pfam short chain dehydrogenase 39 180 IPR002347 -
Mepo3g05825 332 Gene3D - 28 328 - -
Mepo3g05825 332 CDD retinol-DH_like_SDR_c_like 37 316 - -
Mepo3g05825 332 PANTHER RETINOL DEHYDROGENASE 14 323 - -
Mepo3g05825 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 301 IPR036291 -
Mepo3g05825 332 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Mepo3g05825 332 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Mepo3g05825 332 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Mepo3g05825 332 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Mepo3g05825 332 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Mepo3g05825 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Mepo3g05825 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Mepo3g05825 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05825 Mepo-Chr3 72528579 72531785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05825 41 260 Acyl Lipid Metabolism Gene Families AT3G46170 28.444 3.10e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05825 - - gmx:100799729 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05825 3 72528579 72531785 Mepo3g05825 3 72528579 72531785 ECH
Mepo1g01414 1 13944729 13948271 Mepo3g05825 3 72528579 72531785 PCT