Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01414 ATGTTTGGCATCAAAAGAAAAAAGGAATCATCGATGAAGGAAACAATAAGGTATTTGGCAGGCATTGCAGGGCCTAGTGGTTTTGGCTCAAATTCAACTGCAGAGCAAGTCACACAACATTGCTCTTTTTTCCTCCCTTCAAATCTAACTGCTCTCATCACTGGTGCTACTTCTGGTATTGGAGCTGAAACAGCTAGGGTGCTAGCAAAAAGAGGAGTGAGAGTTGTGGTTGGTGCCAGGGACATGAAAAAGGCTATGAAAGTGAAAGAAAAAATCCAAGAGGAGAGTCCTTATGCTGAGGTTATTCTATTGGAGATTGATCTTAGCTCTCTTGCTTCTGTACAAAGATTTTGTTCAGAGTTTTTAGCTTTAGAATTGCCCCTTAATATTCTCATAAATAATGCAGGAGTGTACTCTCATAACCTGGAATTCTCCGAAGAGAAAATTGAATTGACATTTGCTACAAATTACTTAGGACATTTTTTGTTAACAAAAATGCTACTGGAGAAAATGATATATACTGCAAATAAAACAGGCATTCAAGGAAGAATAATAAATATTTCTTCAGTAATTCATAGCTGGGTGAAAAGAAGTTGCTTTTGTTTCAAAGACATGCTCACTGGAAAAAATTACAATGGGACACGTGCATATGCTCAATCCAAATTAGCCATGATTCTGCATGTGAAGGAAATTGCTAGACAACTAAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTGCATCCAGGCATTGTGAAGACGGGAATTATTAGAGCACATAAGGGCTTAATAACTGATTCCTTGTTTTTTATTGCATCGAAGCTGCTCAAAACGACATCACAGGGTGCATCAACTACTTGTTATGTTGCTCTAAGCCAAAAAACCGAAGGGGTGAGTGGGAAATTCTTTACTGATTGTAACGAGAGTAGCTGCTCAAGACTTGCAAACGACGAATCAGAAGCCAAAAAGCTATGGAACAATACAAATACTTTGCTTCATAAACGACTAAAACAAGCAACAATTGGAAGTTCTTCTTCCCTCTATTCCAGACCATGTATCTAG 1062 0.3823 MFGIKRKKESSMKETIRYLAGIAGPSGFGSNSTAEQVTQHCSFFLPSNLTALITGATSGIGAETARVLAKRGVRVVVGARDMKKAMKVKEKIQEESPYAEVILLEIDLSSLASVQRFCSEFLALELPLNILINNAGVYSHNLEFSEEKIELTFATNYLGHFLLTKMLLEKMIYTANKTGIQGRIINISSVIHSWVKRSCFCFKDMLTGKNYNGTRAYAQSKLAMILHVKEIARQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKTTSQGASTTCYVALSQKTEGVSGKFFTDCNESSCSRLANDESEAKKLWNNTNTLLHKRLKQATIGSSSSLYSRPCI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01414 353 PANTHER RETINOL DEHYDROGENASE 25 331 - -
Mepo1g01414 353 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 182 190 IPR002347 -
Mepo1g01414 353 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 IPR002347 -
Mepo1g01414 353 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 217 236 IPR002347 -
Mepo1g01414 353 Gene3D - 46 337 - -
Mepo1g01414 353 PRINTS Glucose/ribitol dehydrogenase family signature 217 236 IPR002347 -
Mepo1g01414 353 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Mepo1g01414 353 PRINTS Glucose/ribitol dehydrogenase family signature 50 67 IPR002347 -
Mepo1g01414 353 PRINTS Glucose/ribitol dehydrogenase family signature 240 257 IPR002347 -
Mepo1g01414 353 PRINTS Glucose/ribitol dehydrogenase family signature 176 192 IPR002347 -
Mepo1g01414 353 CDD retinol-DH_like_SDR_c_like 50 325 - -
Mepo1g01414 353 Pfam short chain dehydrogenase 209 257 IPR002347 -
Mepo1g01414 353 Pfam short chain dehydrogenase 50 191 IPR002347 -
Mepo1g01414 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 49 310 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01414 Mepo-Chr1 13944729 13948271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01414 28 303 Acyl Lipid Metabolism Gene Families AT3G46170 25.784 2.44e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01414 - K11153 gmx:100819058 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01414 1 13944729 13948271 Mepo1g01414 1 13944729 13948271 ECH
Mepo1g01414 1 13944729 13948271 Mepo3g05825 3 72528579 72531785 PCT