Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05454 ATGGCAGCAGCCGTAGAAACACCTAGCAGCAGAGGAGGACATAGATGGTCTCTAACTGGAATGACAGCTCTTGTAACCGGTGGCACTCGTGGAATCGGGCATGCCATAGTGAATGATCTTGTTGCATTTGGTGCTACTGTCCACACTTGTTCAAGGACTGAATCAGAGCTCAATAAGTGTTTACAAGAATGGCAAAGCCAGGGATTTTCGGTTACTGGGTCGGTCTGTGATGTAAGCTCTCGACCACAAAGAGAGAGCCTTATTCAACAAGTGGCTTCCACTTTCAATGGCAAGCTCAACATCTTTGTAAATAATGTGGGATCAAACTTTAGAAAGCCAACCATTGAGTACACTGCTGAAGAATATTCAGAGCTAATGACAATTAATTTAGACTCCTCATTCCATCTGTGCCAACTTTCATATCCTCTTCTAAAAGAATCTGGAAAGGGTAGCATTGTGTTCATTTCATCTGTTGCAGGTGTGGTTAGCTTAGGTACTGGATCTGTCTACGCAGCAAGTAAAGCTGCAATTAATCAGCTTACAAAAAATCTGGCCTGTGAATGGGCAATAGACAACATAAGGAGCAATTGTGTTGTACCATGGGCAACCAGAACCCCACTTGTCGAACATTTATTTCAAAATCAAAATTTTGTGGATGATATTATGTCTCGAACTCCTCTTAAGCGCATTGCCGAACCCGAAGAGGTCTCCTCTTTGGTGACTTTCCTTTGCTTACCTGCTGCATCTTACATCACTGGACAAGTTATTTGTGTTGATGGGGGATTAACTGTGTTTGGATTTCAACCCAGCATGAGAATTACATGA 825 0.4267 MAAAVETPSSRGGHRWSLTGMTALVTGGTRGIGHAIVNDLVAFGATVHTCSRTESELNKCLQEWQSQGFSVTGSVCDVSSRPQRESLIQQVASTFNGKLNIFVNNVGSNFRKPTIEYTAEEYSELMTINLDSSFHLCQLSYPLLKESGKGSIVFISSVAGVVSLGTGSVYAASKAAINQLTKNLACEWAIDNIRSNCVVPWATRTPLVEHLFQNQNFVDDIMSRTPLKRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGLTVFGFQPSMRIT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05454 274 FunFam Short-chain dehydrogenase reductase 8 267 - -
Mepo3g05454 274 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 157 185 IPR020904 GO:0016491
Mepo3g05454 274 PRINTS Glucose/ribitol dehydrogenase family signature 144 160 IPR002347 -
Mepo3g05454 274 PRINTS Glucose/ribitol dehydrogenase family signature 191 208 IPR002347 -
Mepo3g05454 274 PRINTS Glucose/ribitol dehydrogenase family signature 170 189 IPR002347 -
Mepo3g05454 274 PRINTS Glucose/ribitol dehydrogenase family signature 22 39 IPR002347 -
Mepo3g05454 274 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Mepo3g05454 274 PRINTS Glucose/ribitol dehydrogenase family signature 97 108 IPR002347 -
Mepo3g05454 274 Gene3D - 12 266 - -
Mepo3g05454 274 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 20 265 IPR036291 -
Mepo3g05454 274 PANTHER TROPINONE REDUCTASE 15 265 IPR045000 GO:0016491
Mepo3g05454 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 158 IPR002347 -
Mepo3g05454 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 97 108 IPR002347 -
Mepo3g05454 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 189 IPR002347 -
Mepo3g05454 274 Pfam Enoyl-(Acyl carrier protein) reductase 29 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05454 Mepo-Chr3 68278652 68280582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05454 15 269 Miscellaneous Gene Families AT2G29290 61.868 3.64e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05454 K08081 - gmx:100527615 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05454 3 68278652 68280582 Mepo3g05447 3 68209451 68211941 ECH
Mepo3g05454 3 68278652 68280582 Mepo3g05454 3 68278652 68280582 ECH