Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04726 ATGGATATTTCTGAATGTACAAGGATTGTTTTAGATAAAATTCAAAGATTCGAGCCAGAACATGCTACAAAGATCATTGGATATCTTCTTATGCAAGATCATGGTGAGCAAGAGATTGCTAAATTAGCGTCGTTTCCAGATAATTTAATCCGTGAAGTTGCCCTTAAGGCCAAAACTGAGCTTCAAAAAATGGCTACCAGATCGGTAATCTCGTCCGGAAATTCTTCGCCGGCAAGTTTTCAGGTTCACTCTCCCTATTACAATCAGCATCATGGTAATACGAGTCCAGAATTTATGACAATAGGCACCACTGAACATCAAACCCGTACTGCATTGTTCCGTTCGGAAAATCATCATCATGTAGATAGTGTAAATTCTACAACTGATAACTATGATTGCTATAATTACTACTTAGAATATGCTTCAGCCGTAGCCAATTTGAATGGAAAAATTGGTAAAAGGTTTTCAAACATGACTGAATTTCCATCCAAAACATGTCACTATTTCAGCAAAGGATATTGCAGGCATGGAAATAGTTGTAGGTTCTATCATCATGGACAAGCTATTTCCGACATAGTCTCTCATATGTATGGAAACGATGCTGCTGCTAACGACGAACAAGCGATGTCGCCTGGATCACTGGCGCAACTAGAGTCAGAAATCGTCGAGCTCTTAAAACAAAGAGGAAATCCTATATCAATTGCTTCACTTCCAATGGCATACTATGATAAGTATAAAAAGGTATTACAAGCAGAAGGTTACCTAGCTGAGAGCCAACGACATGGTAAGTCCGGCTACAATTTGACGAAGCTTCTTATCCGGTTGCGAAATAGTATTCGGCTAATTGACAGGCCTCATGGGCAGCATGCGGTAGTTTTGGCAGAAGATGTGCCGAAATTCATGGGAAAGGCAGATTGTCAAAATATTAGTGCATCACAACAAATTTACTTGACATTTCCAGCTGATAGCACTTTCTCTGAGGAGGATGTATCAAACTACTTTGGTACTTTTGGATCGGTTGAAGATGTAAGGATTCCATGCCAGCAGAGAAGGATGTTTGGATTTGTGACATTTATTGAACCAGAAACTGTTAAAATGATTTTGGATAAGGGAAATCCTCATTATGTTCGAGGATCTCGGGTTCTTGTGAAACCATACAAGGAGAAGCCTAAACTTATTGACAGGAAGTATCCATATAGAGTTGAGCATCATGTCTGTTATTCACCGCGCTATGGAGACATCGACGCTGAAATGGCCTCAAGTCCAAGAAGCTGTGGCAATCCTCGGTATTTGACAAGGCTTCTCCTTGAAGAACAAGACCGGATCTTTGAATTGCAGAGAAGGCGTCTTGCACTGTTGCAAATTGCTCAAAAAACTTTGTCTAGTCCACCCCATTTTGGCATCAACATGAATGCATCAAGAGCTTCAGATGACCATTTCAATGTCCAGGCTGCTGAATCTTTCAGTTATCTGCAACATGTCAAAGCCGAGTACACAGATGCCAATAACTCCGATAAGGACAGCAGTGAAGGACTGAATCTCCCGGACAGCCCGTTTTCGTTTCGAATAGATACCGGAATTTCAGCAATGATGTAG 1596 0.4085 MDISECTRIVLDKIQRFEPEHATKIIGYLLMQDHGEQEIAKLASFPDNLIREVALKAKTELQKMATRSVISSGNSSPASFQVHSPYYNQHHGNTSPEFMTIGTTEHQTRTALFRSENHHHVDSVNSTTDNYDCYNYYLEYASAVANLNGKIGKRFSNMTEFPSKTCHYFSKGYCRHGNSCRFYHHGQAISDIVSHMYGNDAAANDEQAMSPGSLAQLESEIVELLKQRGNPISIASLPMAYYDKYKKVLQAEGYLAESQRHGKSGYNLTKLLIRLRNSIRLIDRPHGQHAVVLAEDVPKFMGKADCQNISASQQIYLTFPADSTFSEEDVSNYFGTFGSVEDVRIPCQQRRMFGFVTFIEPETVKMILDKGNPHYVRGSRVLVKPYKEKPKLIDRKYPYRVEHHVCYSPRYGDIDAEMASSPRSCGNPRYLTRLLLEEQDRIFELQRRRLALLQIAQKTLSSPPHFGINMNASRASDDHFNVQAAESFSYLQHVKAEYTDANNSDKDSSEGLNLPDSPFSFRIDTGISAMM 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04726 531 SUPERFAMILY RNA-binding domain, RBD 324 405 IPR035979 GO:0003676
Mepo3g04726 531 SUPERFAMILY CCCH zinc finger 163 185 IPR036855 GO:0046872
Mepo3g04726 531 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 320 391 - -
Mepo3g04726 531 CDD RRM_AtC3H46_like 315 384 IPR034365 -
Mepo3g04726 531 ProSiteProfiles Zinc finger C3H1-type profile. 160 188 IPR000571 GO:0046872
Mepo3g04726 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 388 IPR000504 GO:0003723
Mepo3g04726 531 ProSiteProfiles OST-type HTH domain profile. 213 296 IPR025605 -
Mepo3g04726 531 Pfam OST-HTH/LOTUS domain 213 290 IPR025605 -
Mepo3g04726 531 Gene3D - 156 226 - -
Mepo3g04726 531 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 521 - -
Mepo3g04726 531 Gene3D - 320 391 IPR012677 -
Mepo3g04726 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 380 IPR000504 GO:0003723
Mepo3g04726 531 SMART rrm1_1 314 384 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04726 Mepo-Chr3 58835267 58838489 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04726 - - gmx:100806206 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04726 3 58835267 58838489 Mepo3g04726 3 58835267 58838489 ECH
Mepo3g04726 3 58835267 58838489 Mepo7g02883 7 39817773 39822708 PCT