Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03870 ATGATGAAGCTCATCGCAGTGTTGCTGCTTGTGGTGGTAACCACCACCGTCACCGCAGATCCCGATAATCTTCAAGACCTCTGTGTTGCAGACCTTGCTTCTGCGATTCTAGTGAATGGATTCACGTGCAAACCAGCTTCCAATGTAACCGCAGCTGATTTCTCCACCAACGTACTAGCCAAACCAGGAGCCACAAACAACACATTTGGTTCCTTAGTAACCTTAGCCAATGTGCAGAAAATCCCAGGACTCAACACACTTGGTGTGTCATTGGCACGTATTGACTATGCTGTAGGTGGACTGAACCCACCTCACACTCACCCACGTGCAACTGAGATTGTGTATGTTCTTGAAGGTCAATTAGATGTTGGGTTCATAACAACCACTAATGTTTTGATATCAAAGACTATTGTTAAGGGTGAAACATTTGTGTTTCCTAAAGGATTGGTTCATTTCCAAAAGAACAGTGGTTATGTACCTGCTGCAGTGATTGCAGGATTCAATAGTCAATTGCAAGGAACAGTGAATATTCCTCTTACTTTGTTTGCTTCTACACCACCTGTTCCAGATAATATTTTGACTCAAGCATTCCAAATTGGTACCAAGGAAGTTCAGAAAATCAAGTCTAGGCTTGCACCCAAGTAG 645 0.4326 MMKLIAVLLLVVVTTTVTADPDNLQDLCVADLASAILVNGFTCKPASNVTAADFSTNVLAKPGATNNTFGSLVTLANVQKIPGLNTLGVSLARIDYAVGGLNPPHTHPRATEIVYVLEGQLDVGFITTTNVLISKTIVKGETFVFPKGLVHFQKNSGYVPAAVIAGFNSQLQGTVNIPLTLFASTPPVPDNILTQAFQIGTKEVQKIKSRLAPK 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03870 214 SUPERFAMILY RmlC-like cupins 20 210 IPR011051 -
Mepo3g03870 214 SMART Cupin_1_3 56 205 IPR006045 -
Mepo3g03870 214 CDD cupin_OxOx 20 211 IPR001929 GO:0030145
Mepo3g03870 214 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 209 - -
Mepo3g03870 214 PRINTS Germin signature 135 155 IPR001929 GO:0030145
Mepo3g03870 214 PRINTS Germin signature 168 183 IPR001929 GO:0030145
Mepo3g03870 214 PRINTS Germin signature 105 125 IPR001929 GO:0030145
Mepo3g03870 214 FunFam germin-like protein subfamily 2 member 1 19 213 - -
Mepo3g03870 214 ProSitePatterns Germin family signature. 100 113 IPR019780 GO:0030145
Mepo3g03870 214 Gene3D Jelly Rolls 19 213 IPR014710 -
Mepo3g03870 214 Pfam Cupin 59 205 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03870 Mepo-Chr3 48185509 48187036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03870 5 214 Miscellaneous Gene Families AT3G05930 52.607 2.05e-75 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03870 - - gmx:100791628 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03870 3 48185509 48187036 Mepo4g03519 4 44690935 44692808 PCT