Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01909 ATGGGTGTAATGTCTGAGAAACCCCTTCAAGAACTTTCTCTTCACTCTACAGACACAACATTTTCTCCTCCACCTAAAAGGTTGGAAGGAAAAATAGCTATTGTAACGGGCGGAGCTAGAGGAATTGGCGAAGCAACGGTGAGAATTTTTGTGAAACATGGTGCAAAAGTGGTAATTGCTGACGTTGAAGATGAACTTGGAATCATGCTTGCAAATTCACTCTCTCCATCAGCTATTTATGTCCATTGTGATGTTAGTGTTGAAAAAGATGTTGAAAATTTAGTCACGTCAACACTTTCTCACTATGGAAAACTTGACATAATGTTCAACAATGCTGGCTTTCTTGGAAACCAATCCAAGAACAAAAAAAGCATTGTGAACTTCGACACCGAGGAATTCGACCGAGTCATGAGTGTTAATGTTAAAGGAGTTGCTTTAGGAATGAAACATGCTGCAAAGGTTATGATTCCTAGAGGAATTGGATGCATAATTTCCACTGCCAGTGTAGCTGGAGTTTTAGGAGGACTTGGTCCACATGCTTATACAGCTTCAAAGCATGCTATAGTTGGATTAACAAAGAATGCTTCATGTGAATTGGGAAAATATGGTATAAGGGTTAATTGCATTTCTCCATTTGGTGTTGCAACATCTATGCTTGTAAATGCTTGGAGAAATGGAGATGATGAAGTTGATGAGGGAATCAATTTTGGATTGCCTTTAATTGAAGAGGTAGAGAAAATGGAGGAATTTGTTAGAGGGATTGGTAATTTGAGGGGAACAACTTTAAAGGCTCAAGATATTGCTGAGGCTGTTCTTTATCTTGCTAGTGATGAATCAAAGTATGTTAGTGGTCATAATCTTGTTGTTGATGGTGGAATTACTTCCTCCAGAAATTGTATTGGATTGTGA 909 0.3839 MGVMSEKPLQELSLHSTDTTFSPPPKRLEGKIAIVTGGARGIGEATVRIFVKHGAKVVIADVEDELGIMLANSLSPSAIYVHCDVSVEKDVENLVTSTLSHYGKLDIMFNNAGFLGNQSKNKKSIVNFDTEEFDRVMSVNVKGVALGMKHAAKVMIPRGIGCIISTASVAGVLGGLGPHAYTASKHAIVGLTKNASCELGKYGIRVNCISPFGVATSMLVNAWRNGDDEVDEGINFGLPLIEEVEKMEEFVRGIGNLRGTTLKAQDIAEAVLYLASDESKYVSGHNLVVDGGITSSRNCIGL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01909 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 103 114 IPR002347 -
Mepo3g01909 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 200 IPR002347 -
Mepo3g01909 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 169 IPR002347 -
Mepo3g01909 302 Gene3D - 20 300 - -
Mepo3g01909 302 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 25 297 - -
Mepo3g01909 302 FunFam Short-chain dehydrogenase reductase 16 298 - -
Mepo3g01909 302 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 294 IPR036291 -
Mepo3g01909 302 MobiDBLite consensus disorder prediction 1 24 - -
Mepo3g01909 302 CDD secoisolariciresinol-DH_like_SDR_c 27 294 IPR045309 GO:0016616
Mepo3g01909 302 Pfam Enoyl-(Acyl carrier protein) reductase 37 294 - -
Mepo3g01909 302 PRINTS Glucose/ribitol dehydrogenase family signature 32 49 IPR002347 -
Mepo3g01909 302 PRINTS Glucose/ribitol dehydrogenase family signature 257 277 IPR002347 -
Mepo3g01909 302 PRINTS Glucose/ribitol dehydrogenase family signature 155 171 IPR002347 -
Mepo3g01909 302 PRINTS Glucose/ribitol dehydrogenase family signature 181 200 IPR002347 -
Mepo3g01909 302 PRINTS Glucose/ribitol dehydrogenase family signature 202 219 IPR002347 -
Mepo3g01909 302 PRINTS Glucose/ribitol dehydrogenase family signature 103 114 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01909 Mepo-Chr3 28070686 28071870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01909 5 293 Acyl Lipid Metabolism Gene Families AT1G24360 27.090 9.78e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01909 - - tpra:123890470 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01909 3 28070686 28071870 Mepo3g01909 3 28070686 28071870 ECH
Mepo2g00869 2 11121909 11123685 Mepo3g01909 3 28070686 28071870 PCT