Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03858 ATGCCTGGTTTTGTGGCTGTCAAGAAGAGATTTTCAGAGAAAAATGCATGTTTTTCCAATATGGTGAATCAAGAGAAGCCATCTCTTTTGAAAGGTGGTCATAGTGTGAGGTCTGAGGCTGTAGATGATGTTGTTGATGATGATAGCCTTATTCTTTCTGGGCTCCCTGATGATGTTTCAAAGCATTGCCTTGCACTCGTGCCTCGTTCTAACTTCCTAGCTATGGGCGGTGTCTGTAAGAGATGGAAATGCTTTATTCAAAGCAAGGAATTCATAACCGTCCGAAAGTTGGCTGGGCTGCTTGAGGAGTGGCTTTATATCTTAACAGCTGATAGTGAAGGAAAAGGAAGTCATTGGGAGGTTATGGATTCATTTGGTCATAATCGCCGATCTCTTCCACCAATGCCTGGTCCAAGGAAGGCTGGGTTTGGGGTTGTGGTTCTTAACGGAAAGCTTCTTGTTATGGCTGGCTATTCATCAACTGATGGAACTGTTTCTGTTTCAGCAGAGGTTTACCAATATAATTCTAACCTCGACAGTTGGATCAGATTGTCAAACATGAATGTGGCTCGGTACGACTTTGCTTGTGCAGAAGTCAATGGCTTGGTGTATGCTGTTGGAGGATATGGAGCAGAAGGCGACAGTCTCTCCAGCGCCGAGGTTTATGATCCGGATACTAACAAGTGGACAGTGATTGAGAGCCTACGTCGTCCAAGATGGGGTTGCTTTGCCTGTGGATTAAAGGGGAAGCTCTATGTGATGGGTGGAAGGTCAAGCTTCACAATTGGAAATTCTAAGTTTGTTGATGTTTACGACCCTGAGAAGCATAGTTGGTGTGAGATGAAAAATGGGTGTGTTATGGTAACTGCTCATGCAGTACTGGAAAAGAAGTTGTTCTGTATGGAGTGGAAGAATCAACGGAAGCTATCGATATTCAATCCAGATGATAATTCATGGAAAACGGTACCAGTACCTCTGACGGGGAGTTCGAGTGTTGGTTTTAGATTTGGGATACTGAATGGTAAGCTTTTGCTGTTTTCACTGAAGGAAGATCCTACATATAGGACTTTGTTGTATGATCCAAATGCAGAGCCAGGGTGTGAGTGGGGAACTACTGATATAAAACCATCTGGTTTGTGCTTGTGCAGTGTAACTATCAAGGCCTGA 1167 0.4387 MPGFVAVKKRFSEKNACFSNMVNQEKPSLLKGGHSVRSEAVDDVVDDDSLILSGLPDDVSKHCLALVPRSNFLAMGGVCKRWKCFIQSKEFITVRKLAGLLEEWLYILTADSEGKGSHWEVMDSFGHNRRSLPPMPGPRKAGFGVVVLNGKLLVMAGYSSTDGTVSVSAEVYQYNSNLDSWIRLSNMNVARYDFACAEVNGLVYAVGGYGAEGDSLSSAEVYDPDTNKWTVIESLRRPRWGCFACGLKGKLYVMGGRSSFTIGNSKFVDVYDPEKHSWCEMKNGCVMVTAHAVLEKKLFCMEWKNQRKLSIFNPDDNSWKTVPVPLTGSSSVGFRFGILNGKLLLFSLKEDPTYRTLLYDPNAEPGCEWGTTDIKPSGLCLCSVTIKA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03858 388 Gene3D - 89 383 IPR015915 GO:0005515
Mepo2g03858 388 Pfam Kelch motif 141 188 IPR006652 GO:0005515
Mepo2g03858 388 Pfam Kelch motif 190 235 IPR006652 GO:0005515
Mepo2g03858 388 CDD F-box_AtAFR-like 51 95 - -
Mepo2g03858 388 SUPERFAMILY F-box domain 52 92 IPR036047 GO:0005515
Mepo2g03858 388 Pfam F-box domain 52 91 IPR001810 GO:0005515
Mepo2g03858 388 Pfam Kelch motif 239 283 IPR011498 GO:0005515
Mepo2g03858 388 SUPERFAMILY Kelch motif 102 349 IPR015915 GO:0005515
Mepo2g03858 388 SMART kelc_smart 151 201 IPR006652 GO:0005515
Mepo2g03858 388 SMART kelc_smart 250 298 IPR006652 GO:0005515
Mepo2g03858 388 SMART kelc_smart 202 249 IPR006652 GO:0005515
Mepo2g03858 388 PANTHER OS02G0202900 PROTEIN 7 384 IPR045887 -
Mepo2g03858 388 ProSiteProfiles F-box domain profile. 49 97 IPR001810 GO:0005515
Mepo2g03858 388 SMART fbox_2 55 95 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03858 Mepo-Chr2 47802699 47805338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03858 55 233 Miscellaneous Gene Families AT4G33900 26.667 1.38e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03858 - - gmx:100815474 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g03858 2 47802699 47805338 Mepo2g03858 2 47802699 47805338 ECH
Mepo3g06226 3 76428109 76431162 Mepo2g03858 2 47802699 47805338 PCT