Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03585 ATGGGTTTGATTTCTGGGATTTTTATGGGGATGCTATTTGGCATAGCATTGATGGCAGGATGGGCTCGTATGATGAAATACAGAAGTGCCAAGAGAATTGCAAAGGCTGCTGACATCAAAATCCTCGGATCCCTCAACAGAGAAGATTTAAAGAAAATTTGTGGGGAGAATATTCCTGAATGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCTCCTGAGCAAACTTTGGCCATTTGTAGCAGAAGCTGCAACGATGGTGATCAAGGAATCTGTTGAACCTCTACTGGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAACGTAGCTCCAAAAATTGAAGGTATTCGTGTGCAGAGTCTTACCAAAGGTCAAATCATAATGGACGTAGATCTCCGTTGGGGTGGTGATCCCAGTATTATTTTGGCAGTTGAAGCTGCCCTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTAAAAGTTTTCACTATTGCCCGTGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCTGTTGTTGTTGCTCTTCTTGCCGAGCCAAAGCCGAAAATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACTGCTCTTCCTGGAATTTCAGATATGATTGATGATACTGTGAACACAATTGTTACTGATATGCTCCAATGGCCACATAGGATTGTTGTTCCACTTGGTGGTATACCTGTTGATATCAGTGACTTGGAGCTTAAACCTCATGGAAGCCTTAAAGTGACTATAGTGAAAGCGACCGATTTAAAAAATATGGAAATGATTGGAAAATCTGATCCTTATGTTGTTCTGTATATTCGACCTTTATTCAAGGTTAAAACCAAGGTTATTAACAACAACTTGAATCCTGTTTGGGATCAAACATTTGAGTTGATTGCAGAAGACAAGGAGACCCAGTCACTCATTCTTGAGGTTTTTGATGAAGACATTGGGCAAGATAAGCGATTGGGAATCGTAAAATTACCCCTTATTGAATTGGAAGTACAAACTGAAAAAGAGCTTGAATTGAGGCTGCTGTCATCACTTGATACACTCAAGGTGAAAGATAAGAAGGATCGAGGAACCTTGACCGTAAAGGTCCTGTATTACCAGTTTAACAAGGAGGAACAATTGGCTGCACTAGAAGCAGAAAAAGCTATATTAGAAGAAAGGAAGAAACTGAAAGCCGCCGGCGTCATAGGTAGCACAATGGATGCAGTAGGGTCAGGTGTTGGACTAGTTGGAAGTGGCATTGGTGCCGGTGTTGGACTAGTTGGAACTGGCATTGGCGCCGGAGCTGGACTTGTCGGAAGCGGCATTGGCGCTGGAGCTGGACTTGTTGGCAGTGGTTTTGGAGCCTTTGGTAGCGGACTTAGCAAGGCAGGAAAGTTTATGGGAAGGACCATAACAGGTCATAGTGGTTCAAGAAGGAGTGGTTCATCAACTCCAGTTCATAATCCACAGGAAAATGGTAGTCCAAAAAAGGCTCAATAA 1554 0.4234 MGLISGIFMGMLFGIALMAGWARMMKYRSAKRIAKAADIKILGSLNREDLKKICGENIPEWISFPVYEQVKWLNKLLSKLWPFVAEAATMVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDVDLRWGGDPSIILAVEAALVASIPIQLKDLKVFTIARVIFQLAEEIPCISAVVVALLAEPKPKIDYTLKAVGGSLTALPGISDMIDDTVNTIVTDMLQWPHRIVVPLGGIPVDISDLELKPHGSLKVTIVKATDLKNMEMIGKSDPYVVLYIRPLFKVKTKVINNNLNPVWDQTFELIAEDKETQSLILEVFDEDIGQDKRLGIVKLPLIELEVQTEKELELRLLSSLDTLKVKDKKDRGTLTVKVLYYQFNKEEQLAALEAEKAILEERKKLKAAGVIGSTMDAVGSGVGLVGSGIGAGVGLVGTGIGAGAGLVGSGIGAGAGLVGSGFGAFGSGLSKAGKFMGRTITGHSGSRRSGSSTPVHNPQENGSPKKAQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03585 517 Pfam C2 domain 264 360 IPR000008 -
Mepo1g03585 517 Coils Coil 391 411 - -
Mepo1g03585 517 CDD SMP_SYT 59 248 - -
Mepo1g03585 517 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Mepo1g03585 517 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 392 IPR035892 -
Mepo1g03585 517 MobiDBLite consensus disorder prediction 491 517 - -
Mepo1g03585 517 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 416 IPR045050 GO:0008289
Mepo1g03585 517 CDD C2 266 359 - -
Mepo1g03585 517 SMART C2_3c 265 362 IPR000008 -
Mepo1g03585 517 Gene3D C2 domain 260 416 IPR035892 -
Mepo1g03585 517 MobiDBLite consensus disorder prediction 486 517 - -
Mepo1g03585 517 FunFam synaptotagmin-4 isoform X1 259 417 - -
Mepo1g03585 517 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Mepo1g03585 517 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Mepo1g03585 517 PRINTS C2 domain signature 281 293 IPR000008 -
Mepo1g03585 517 PRINTS C2 domain signature 306 319 IPR000008 -
Mepo1g03585 517 PRINTS C2 domain signature 328 336 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03585 Mepo-Chr1 41731853 41742317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03585 266 354 Lipid Metabolism Gene Families AT4G00700 40.449 1.54e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03585 - - tpra:123895719 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03585 1 41731853 41742317 Mepo1g03585 1 41731853 41742317 ECH
Mepo3g02061 3 30019645 30027348 Mepo1g03585 1 41731853 41742317 PCT