Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00401 ATGGCCACGGCGGTAGAGCCAATTCCAAACGGCACTCTCCAATCAGAAACATTTGATACAATCTTTGATGCCTCCGCAAACCCTACGGAGGTGGAATCTGAATCCGCAGGGAAGAGATGGCCAGGTTGGCCAGGTCACTGTGTTTTCCGGCTAATTGTTCCTGTTCTTAAAGTTGGTATCATCATAGGTCGTAAAGGGGAATTGATCAAGAAGACTTGCGAAGAGACTCATGCTCGCATTCGTGTTCTTGATGCTCCAGTTGGTACACCTGATCGAATTGTGCTTATATCGGGAAAAGAGGATTTGGAGGCACCACTTTCTCCTGCAATGGATGCTATTCTAAGGATTTTTAAACGTGTATCCGGATTATCCGAAGTGAACGACAATAATACAACATCAGGAGCTGTAGCGGTTGCATTATGTTCCATCCGTTTATTGGTGGCGTCAACGCAAGCTATCAATTTGATAGGAAAACAAGGCTCGTCAATTAAAGCTATACAGGAAAATACGGGTGCTGTTATTAGAGTTTTGTCGGGAGACGAACTTCCATCTTATGCTGGTGCCGATGAAAGGATTATTGAACTGCAGGGAGAAACCTTGAAGGTCCTTAAAGCTTTGGAAGCCGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGATGGTAGCGTTATTCCCCTATTTGAGAAAACTTGCAATGCAACAATTTCCCAAGACCGCCAGACAGATGCCTGGGCTGACAAACCATCACTGCATAGTGCTTCACAACCTAGCATTGTTGCTGACATTCCTCCGACCACAAAGAGGGATTCTTTCTTTGCTGACCGTGAAAGTCAATTGGATTCATTGCTTTCTTCCTCGACAATGTCATTGTATGGACAAGATTCTTCTTCTATTTCTGGTCTTCGTTCTTCGGCATTTAATCGTGCCAGTGCTTCCATTGTTACTACAGTGATACAAACAATGCAAATACCATTGTCCTATGCAGAGGACATAATTGGTATTCAAGGGACTAATATTGACTACATTCGTCGCACTAGTGGTGCTATATTGACTGTGCAGGAGAGCAGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGTACCTCCACTCAAGTTCAAACAGCACAACAATTGATTCAGGAAGTTATAACCAATCACAACGAAACTATTGCTAGTAGTTATGCTAGGTTAGATACAAGGCCGAGGTCTTCTTACTCTCAACTTGGTAGTTCATCCTATCCATCATCTTCCTTGCCATCACAACCGTACAATGGGTATGGATCTTCTGGTCAAGGGGATTATAGTACTTTCAGACTTTAA 1317 0.4336 MATAVEPIPNGTLQSETFDTIFDASANPTEVESESAGKRWPGWPGHCVFRLIVPVLKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVLISGKEDLEAPLSPAMDAILRIFKRVSGLSEVNDNNTTSGAVAVALCSIRLLVASTQAINLIGKQGSSIKAIQENTGAVIRVLSGDELPSYAGADERIIELQGETLKVLKALEAVVGHLRKFLVDGSVIPLFEKTCNATISQDRQTDAWADKPSLHSASQPSIVADIPPTTKRDSFFADRESQLDSLLSSSTMSLYGQDSSSISGLRSSAFNRASASIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSTQVQTAQQLIQEVITNHNETIASSYARLDTRPRSSYSQLGSSSYPSSSLPSQPYNGYGSSGQGDYSTFRL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00401 438 ProSiteProfiles Type-1 KH domain profile. 315 378 - -
Mepo1g00401 438 Gene3D K Homology domain, type 1 314 431 IPR036612 GO:0003723
Mepo1g00401 438 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 39 101 IPR036612 GO:0003723
Mepo1g00401 438 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 310 384 IPR036612 GO:0003723
Mepo1g00401 438 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 36 408 - -
Mepo1g00401 438 CDD KH-I_PEPPER_rpt1_like 46 114 - -
Mepo1g00401 438 Gene3D K Homology domain, type 1 140 216 IPR036612 GO:0003723
Mepo1g00401 438 Pfam KH domain 143 209 IPR004088 GO:0003723
Mepo1g00401 438 Pfam KH domain 49 101 IPR004088 GO:0003723
Mepo1g00401 438 Pfam KH domain 318 380 IPR004088 GO:0003723
Mepo1g00401 438 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 139 224 IPR036612 GO:0003723
Mepo1g00401 438 Gene3D K Homology domain, type 1 46 118 IPR036612 GO:0003723
Mepo1g00401 438 MobiDBLite consensus disorder prediction 400 438 - -
Mepo1g00401 438 SMART kh_6 314 383 IPR004087 GO:0003676
Mepo1g00401 438 SMART kh_6 139 214 IPR004087 GO:0003676
Mepo1g00401 438 SMART kh_6 45 118 IPR004087 GO:0003676
Mepo1g00401 438 ProSiteProfiles Type-1 KH domain profile. 140 209 - -
Mepo1g00401 438 CDD KH-I_PEPPER_rpt2_like 144 214 - -
Mepo1g00401 438 ProSiteProfiles Type-1 KH domain profile. 46 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00401 Mepo-Chr1 3882309 3887029 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00401 K21444 - gmx:100802089 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00401 1 3882309 3887029 Mepo1g00401 1 3882309 3887029 ECH
Mepo1g00401 1 3882309 3887029 Mepo6g01679 6 18787982 18794525 PCT