Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3709 ATGGCAGACGGCTTCTGGAACCGCCAGCAGTCTCTTCTCCCTCATTCCGGCCTGCACAAACGACCACGTCCTGATTACGAAATGCCAGCTTCTGGTCTGCCTACAGGCAATGAGATGCATAATTATCTTGCTCGTGAAGAAGACCGTTCTGGCCACCCAATGGTTAAGGACACAAAAACTATTGGGACTGCTTATGATCGCTTCCTTCAGAGTGGGCAAATTTCTTCATTTACTTCTGGGGAAGCCAGTACAATCGGTGCTCTTGGATTGCAAAGGGGTGTTGGGGGACTACCGAACCATTCGTTTAGTGATCCTTCTGTCATGATAGGGCGTCATGGGGGTGGTGGTCCTGATCTTGCACCAAATGGTCGGGGTGTGAATTATGGATTTCAGCCACCAATGGATGTAGTATCCAGGCCTGGACCTGAGCCAGCACTCCTACCTCCAGACGCTTCGCCTACTCTATATATTGAAGGTCTACCTTCTGATTGTACAAGAAGGGAAGTGGCTCACATTTTCCGCCCGTTTGTTGGATATAGAGAAGTGAGACTTGTAAGCAAAGAAGCCAAGCATCGTGGAGATCCTCTGATCCTTTGTTTTGTGGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTTTGAGTGCCTTGCAAGGCTATAAAGTTGATGAAATCAATCCTGATTCTAGTCATTTGCGGCTTCAATTTTCTCGGTATCCTGGTCCAAGAAGTGGAGGTGGTGGTCCAAGAAGTAGTGGAGGTGGACCAAGAAGTAGTGGAGGTGGTCCCAGAGGTGGACATGGATCTCGTGGTAAGAGGTAA 819 0.4872 MADGFWNRQQSLLPHSGLHKRPRPDYEMPASGLPTGNEMHNYLAREEDRSGHPMVKDTKTIGTAYDRFLQSGQISSFTSGEASTIGALGLQRGVGGLPNHSFSDPSVMIGRHGGGGPDLAPNGRGVNYGFQPPMDVVSRPGPEPALLPPDASPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHRGDPLILCFVDFANPACAATALSALQGYKVDEINPDSSHLRLQFSRYPGPRSGGGGPRSSGGGPRSSGGGPRGGHGSRGKR* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3709 272 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 6 249 - -
Mal8g3709 272 PANTHER RNA-BINDING PROTEIN 2 6 249 - -
Mal8g3709 272 Gene3D - 150 238 IPR012677 -
Mal8g3709 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 238 IPR000504 GO:0003723
Mal8g3709 272 SMART rrm1_1 154 227 IPR000504 GO:0003723
Mal8g3709 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 222 IPR000504 GO:0003723
Mal8g3709 272 SUPERFAMILY RNA-binding domain, RBD 140 269 IPR035979 GO:0003676
Mal8g3709 272 MobiDBLite consensus disorder prediction 1 38 - -
Mal8g3709 272 MobiDBLite consensus disorder prediction 233 272 - -
Mal8g3709 272 CDD RRM_RBPMS_like 153 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3709 Mal-Chr8 107085702 107093482 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3709 - - cam:101512502 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g3709 8 107085702 107093482 Mal1g2143 1 28129121 28135057 PCT