Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0287 ATGGATATATCAGAATACACAAGAATTGTATTTGATAAGGTTCAGAAATTTGAGCCTGAAAATGCTACAAAGATAATTGGCTATCTCCTTTTACAAGACCATGGTGAACAAGAAATGGCTAGATTGGCATCTTGTCCTGACCATATCATCGGTGAAGTCGTCCTTAAGGCCAAGACTGATCTTCAAAGCTTGGCTGTTGGCTCAACCATGATGCCAATTCCGCCACCTAATGTCAACCCTCAACATGGTTTAAGCCATTTTCCGGTATTATCTCCGTCTTCACCACTGAACTTTCAAGTTCCATCTTCCTATTGGGATCCACAATCTACTAGCAATGCAAATCCTGAATATATGGGAATGAATTACATGGATTCTATCGCAGAACTTCAGAAACAAACACAATTGTTGAGTTTGGAGAATCATTTGGATCATGTGAATACCGGAACTCGAGGTGTTGTTGTCAATGACTACAACAATGGCTTAGATTCTTCTGCTGGCAATTTCAGTGGAAAAGCTGCAAAAAGGTTTTCAAATTCAAACATGTCTGAAATTCCACTCAAGATCTGTCATTATTTCAGTAAAGGTTACTGTAGGCATGGAAGTAACTGCAGATATTTTCATGGTCAAGTTCCTCATGAGAGTTACTCTCATATGCATGGAAATAATGATAATACTAGTAATGAGGATCCAGTGATTTCACCAGGGTCACTAGCTCAGATAGAGTCTGAAATTATTGAGCTTTTAAAGCAGAGAAGGGGAAATCCAATGTCGATTGCTTCGCTGCCGATGGCATACTATGATAAATATAAAAAGGTACTGCAAGCACATGGTTATTTAACGGAGAGCCAGCGACATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTCGCACGACTCAATAGCATTCGGCTAATCGATAGGCCTCACGGACAGCATGCAGTTATTCTGGCTGAAGATGCTCCCAGATACATTCAAAAGGGAGATTCTGTTCAAAATATTAGTGCGTCGCGACAAATATATTTGACTTTTCCAGCTGACAGCACTTTCACTGAAGAGGATGTCGCGGAGTACTTCAACGCATTTGGGTATGTTGAAGATGTAAGGATTCCATGCCAGCAGAAAAGGATGTTTGGGTTCGTAACATTTGCTGATCCTGAAACCGTGAGAATGATTTTGGACAAGGGAAATCCTCATTATGTTCGTGGCTCTCGTGTGCTTGTGAAACCTTACAGGGAGAAGACAAAGGTTGTTGAAAGGAGGTACCATGATAGAATGGAGCACTCTGTTTGTTGTCCACATCACTTTGCAAATGTCGACTCCGAACTTGACTCCATTCCAAGAAGTTATGTGAACCATAGATCTCTAAGTAGACAGTTGATGGAAGAGCATGAACAAGCTTTTGAATTGCAAAGGAGACGTCTTGCGCAGCTGCAGTTTACCCGAAGACCTTTTCCCATTTCACCTCATTTTGGCTTCCCCATGGATGCGTTAAGAGTTCCAGATGGTCATTTCAATTTCCAGGCTGCGGAACCTCTAAATAACAACACCAACACCAAGAATACAGACACCGATTCCTCTGGAGGGAATAGCAACGAAGGACTCAATCTCCCGGACAGTCCATTTGCGTTTCCAATGGAAAATGATAAATAG 1650 0.4152 MDISEYTRIVFDKVQKFEPENATKIIGYLLLQDHGEQEMARLASCPDHIIGEVVLKAKTDLQSLAVGSTMMPIPPPNVNPQHGLSHFPVLSPSSPLNFQVPSSYWDPQSTSNANPEYMGMNYMDSIAELQKQTQLLSLENHLDHVNTGTRGVVVNDYNNGLDSSAGNFSGKAAKRFSNSNMSEIPLKICHYFSKGYCRHGSNCRYFHGQVPHESYSHMHGNNDNTSNEDPVISPGSLAQIESEIIELLKQRRGNPMSIASLPMAYYDKYKKVLQAHGYLTESQRHGKSGYSLTKLLARLNSIRLIDRPHGQHAVILAEDAPRYIQKGDSVQNISASRQIYLTFPADSTFTEEDVAEYFNAFGYVEDVRIPCQQKRMFGFVTFADPETVRMILDKGNPHYVRGSRVLVKPYREKTKVVERRYHDRMEHSVCCPHHFANVDSELDSIPRSYVNHRSLSRQLMEEHEQAFELQRRRLAQLQFTRRPFPISPHFGFPMDALRVPDGHFNFQAAEPLNNNTNTKNTDTDSSGGNSNEGLNLPDSPFAFPMENDK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0287 549 MobiDBLite consensus disorder prediction 506 549 - -
Mal8g0287 549 ProSiteProfiles OST-type HTH domain profile. 236 319 IPR025605 -
Mal8g0287 549 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 547 - -
Mal8g0287 549 SUPERFAMILY RNA-binding domain, RBD 347 420 IPR035979 GO:0003676
Mal8g0287 549 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 547 - -
Mal8g0287 549 SUPERFAMILY CCCH zinc finger 186 208 IPR036855 GO:0046872
Mal8g0287 549 Gene3D - 337 416 IPR012677 -
Mal8g0287 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 404 IPR000504 GO:0003723
Mal8g0287 549 MobiDBLite consensus disorder prediction 508 536 - -
Mal8g0287 549 Pfam OST-HTH/LOTUS domain 236 313 IPR025605 -
Mal8g0287 549 Gene3D - 151 219 - -
Mal8g0287 549 SMART rrm1_1 338 408 IPR000504 GO:0003723
Mal8g0287 549 ProSiteProfiles Zinc finger C3H1-type profile. 183 210 IPR000571 GO:0046872
Mal8g0287 549 Coils Coil 460 480 - -
Mal8g0287 549 CDD RRM_AtC3H46_like 339 408 IPR034365 -
Mal8g0287 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 412 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0287 Mal-Chr8 4085656 4089903 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0287 - - gmx:100818984 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g0287 8 4085656 4089903 Mal8g0287 8 4085656 4089903 ECH
Mal2g3582 2 56073069 56075596 Mal8g0287 8 4085656 4089903 PCT