Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3582 ATGGATATTTCTGAATGTACAAGGATTGTTTTTGATAAAATTCAAAGATTTGAGCCAGAACATGCTACAAAGATCATTGGATATCTCCTTATGCAAGATAATGGTGAGCAAGAGATTGCTAAATTAGCTTCATTTCCAGATAATTTGATCCGCGAAGTTGCCCTTAAGGCCAGAACCGAGCTTCAAAAGATGGCTGCTACTAGATCAGTAACCTCGTCCGGAAATACTACACCGGCAAGTTTTCAGGTTCACTCTCCCTATTACAATCAAAACCATGGAAATAATAATCCAGAATTTATGACAATAGGTATCACTGAACATCAAACACGTACTGCATTGTTCGGTTGGGAGAATCATCATCATGTAGATAGTGTAAATTCTACAACTGATAACTATGATTGCTATAATTACTACTTAGAATATGCTTCAGCTGTAGCCAATTTGAATGGAAAAATTGGTAAAAGGTTTTCAAATATGACTGAATTTCCATTCAAAACATGTCACTATTTCAGCAAAGGATATTGCAGGCATGGAAATAGTTGTAGGTTCTATCATCATGGACAAGCTGTTTCTGAGATATTCTCTCAGATGTATGGAAACGATGCTGCTGCTAACGACGAACAAGCGATTTCGCCTGGATCACTGGCACAACTAGAGTCGGAAATCGTCGAGCTCTTAAAACAAAGAGGAAATCCTATTTCAATTGCTTCACTTCCAATGGCATATTATGATAAGTATAAAAAGGTGTTACAAGCAGAAGGTTACCTAGCTGAGAGCCAACGACATGGTAAGTCCGGCTACAATTTGACGAAGCTTCTTATCCAATTGCGTAATAGTATTCGGCTAATTGACAGGCCTCATGGGCAGCATGCGGTGGTTTTGGCAGAAGATGCGCCGAAATTCATGGGAAAGGCAGATTGTCAGAATATTAGTGCATCACAACAAATTTACTTGACATTTCCAGCTGATAGCACTTTCTCAGAGGAGGATGTATCAAACTACTTTGGTACTTTTGGATCTGTTGAAGATGTAAGGATTCCATGCCAACAAAGAAGGATGTTTGGCTTTGTGACATTTGTTGATCCGGAAACTGTTAAAATGATTTTGGATAAGGGAAATCCTCATTATGTTCGAGGATCTCGGGTTCTTGTGAAACCATACAAGGAGAAGCCAAAACTTATTGACAGGAAGTATCCATATAGAGTTGAGCATCATGTTTGTTATTCACCGCGCTATGTAGACATCGACGCTGAAATCGCCTCAAGTCCAAGAAGTTGTGGAAATCCTCGGTATCTGACAAGGCTTCTCCTTGAAGAACAAGACCGAGTCTTTGAATTGCAGAGAAGGCGTCTTGCACTGTTGCAAATTGCGCAAAAATCTTTGTCTAGTGCACCGCATTTAGGGATCAACATGAATGGATCAAGAGTTTCAGAAGATCATTTCAATGTCCAGGCTACTGAATCTTTTAGTTATCCACAAAACGACAAATCCGAGTACACAGATGCCAATAATTCCGATGAGGACAGTGAACATGAAGGACTGAATCTCCCGGACAGCCCGTTTTCGTTTCGAGTAGATACCGGAATTTCAGCAGTCATGTAG 1602 0.3995 MDISECTRIVFDKIQRFEPEHATKIIGYLLMQDNGEQEIAKLASFPDNLIREVALKARTELQKMAATRSVTSSGNTTPASFQVHSPYYNQNHGNNNPEFMTIGITEHQTRTALFGWENHHHVDSVNSTTDNYDCYNYYLEYASAVANLNGKIGKRFSNMTEFPFKTCHYFSKGYCRHGNSCRFYHHGQAVSEIFSQMYGNDAAANDEQAISPGSLAQLESEIVELLKQRGNPISIASLPMAYYDKYKKVLQAEGYLAESQRHGKSGYNLTKLLIQLRNSIRLIDRPHGQHAVVLAEDAPKFMGKADCQNISASQQIYLTFPADSTFSEEDVSNYFGTFGSVEDVRIPCQQRRMFGFVTFVDPETVKMILDKGNPHYVRGSRVLVKPYKEKPKLIDRKYPYRVEHHVCYSPRYVDIDAEIASSPRSCGNPRYLTRLLLEEQDRVFELQRRRLALLQIAQKSLSSAPHLGINMNGSRVSEDHFNVQATESFSYPQNDKSEYTDANNSDEDSEHEGLNLPDSPFSFRVDTGISAVM* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3582 533 MobiDBLite consensus disorder prediction 486 519 - -
Mal2g3582 533 SUPERFAMILY RNA-binding domain, RBD 325 405 IPR035979 GO:0003676
Mal2g3582 533 CDD RRM_AtC3H46_like 316 385 IPR034365 -
Mal2g3582 533 Pfam OST-HTH/LOTUS domain 214 291 IPR025605 -
Mal2g3582 533 SMART rrm1_1 315 385 IPR000504 GO:0003723
Mal2g3582 533 Gene3D - 321 392 IPR012677 -
Mal2g3582 533 MobiDBLite consensus disorder prediction 500 514 - -
Mal2g3582 533 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 533 - -
Mal2g3582 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 381 IPR000504 GO:0003723
Mal2g3582 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 389 IPR000504 GO:0003723
Mal2g3582 533 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Mal2g3582 533 ProSiteProfiles OST-type HTH domain profile. 214 297 IPR025605 -
Mal2g3582 533 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3582 Mal-Chr2 56073069 56075596 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3582 - - gmx:100806206 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g3582 2 56073069 56075596 Mal8g0287 8 4085656 4089903 PCT